barSeed - Barley Seed Development Database

Probe CUST_13123_PI390587928

Source Contig U35_26575

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13123_PI390587928	Hv_44K_v2	TAGAGAGTTGGCGAAATGCTGGAGCACTATATTCTACTCCTCCTGGTTCCAATGATGATT	604	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376123	2377	2e-24	1386 - 1445	100	60 / 60	plus	ABC19146
MLOC	MLOC_60701.1	3256	2e-24	1209 - 1268	100	60 / 60	plus	ABC19146
MLOC	MLOC_60701.2	3005	2e-24	1209 - 1268	100	60 / 60	plus	ABC19146
JLOC1	JLOC1_39610.2	2288	8e-25	1210 - 1269	100	60 / 60	plus
JLOC1	JLOC1_39610.1	2539	8e-25	1210 - 1269	100	60 / 60	plus
Harvest21	ABC48431	664	3e-25	605 - 664	100	60 / 60	plus
Harvest35	U35_26575	664	3e-25	605 - 664	100	60 / 60	plus

Contig Sequence (664 bp)

>U35_26575 664 Hv_44K_v2
GTCAATGCCTACACCGGGAGGGCCGACCAGGTGTACAGGGTGCTGCACAGGACGCGCACG
CTCGTCAGGCAGGTGTGCCAGGCCACCGCCCAGGTGGTCGAGGCCTGGTTCCGGTCCGAC
GCCGCCGCGGAGGCCGGCGTGGACAAGTGGGACGCCAGGAAGGTCAGGGAAGGCGTGGTG
AAGGGCGGCGGCGGCTGGCATGGCCAGGGCTGGCTGGGCAAGGGGCAATGGGACGTCGGG
CAGAGCGAGATGGACAAGGACGGCAAATGCCAGCGCTGCGGCGAGAAGCTCGTGTGCATA
GACATCGATCCTTCCGAGACAGAGACCTTTGCCAAGTCCCTCGCCGAACTCGCGTGCAAC
CGGGAGGTCAGGGATGATTTCGTAAGGTTTCAGGACTGGCTCCATCGCCACGGACCATTC
GACGCTGTTATCGATGCTGCTAATGTTGGTCTTTACAAGAGTAAAGCTTTCAGTTTTTCT
CAGGTGAATTCTGTTGTAAATGGCATACAGAGAGTAACCAAGTCAAAGAAATTGCCGCTG
ATCGTTCTGCATAGGAGCCGAGTAAATTGTGGCCCTGCAAAAACACCACAGAATCAGAAG
CTCATAGAGAGTTGGCGAAATGCTGGAGCACTATATTCTACTCCTCCTGGTTCCAATGAT
GATT

Homology of Contig U35_26575 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g59600.2	321	2e-98	protein\|pentatricopeptide, putative, expressed
Brachypodium v1_2	Bradi5g27596.1	568	7e-120
Arabidopsis v10	AT2G32230.1	572	2e-79	\| Symbols: PRORP1 \| proteinaceous RNase P 1 \| chr2:13679608-13681756 REVERSE LENGTH=572