barSeed - Barley Seed Development Database

Probe CUST_13093_PI390587928

Source Contig U35_13998

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13093_PI390587928	Hv_44K_v2	TAGTAGTTGTTGTCTGAATGCTGTATGGTTGCCAACACTTTGTTGGCTCGTTCGTTGTAT	650	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38134.3	2284	2e-24	2094 - 2153	100	60 / 60	minus	ABC01124 ABC02841 ABC05257 ABC47224
MLOC	MLOC_38135.1	791	2e-24	498 - 557	100	60 / 60	minus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01131 ABC01136 ABC01140 ABC01141 ABC01142 ABC01143 ABC01146 ABC01147 ABC01151 ABC01154 ABC01156 ABC01157 ABC01161 ABC01162 ABC01166 ABC01167 ABC01177 ABC01179 ABC01184 ABC31601 ABC31617 ABC37479 ABC47224 ABC49951
MLOC	MLOC_38134.4	2383	2e-24	2094 - 2153	100	60 / 60	minus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01136 ABC01143 ABC01146 ABC01147 ABC01154 ABC01157 ABC01161 ABC01166 ABC01177 ABC02841 ABC05257 ABC31601 ABC31617 ABC37479 ABC47224 ABC49951
JLOC1	JLOC1_24774.1	782	8e-25	489 - 548	100	60 / 60	minus
Harvest21	ABC01160	648	3e-25	554 - 613	100	60 / 60	plus
Harvest21	ABC01144	668	3e-25	543 - 602	100	60 / 60	plus
Harvest21	ABC01124	797	3e-25	650 - 709	100	60 / 60	plus	ABC01124
Harvest21	ABC47224	260	2e-22	60 - 117	98	57 / 58	minus	ABC47224
Harvest35	U35_13998	796	3e-25	651 - 710	100	60 / 60	plus
Harvest35	U35_13989	668	3e-25	543 - 602	100	60 / 60	plus

Contig Sequence (796 bp)

>U35_13998 796 Hv_44K_v2
TCTCAGTCCCCACTTTCCCTTCCAGCAAACTCACACAACCCACCACCGAATCTCCCAACC
CCACTCGAAGCAGCAGCAGCCATGGCCCCCAAGGCAGACAAGAAGCCGGCCGCCGAGAAC
AAGGTCGAGAAGGCGGCGGAGAAGACCCCCGCCGGCAAGAAGCCCAAGGCCGAGAAGCGG
CTGCCGGCGGGGAAGACGGCGTCCAAGGAGGCCGGCGGCGAGGCGAAGACCAGGGGCCGG
AAGAAGGGCAGCAAGGCCAAGAAGAGCGTGGAGACGTACAAGATCTACATCTTCAAGGTG
CTGAAGCAGGTCCACCCCGACATCGGCATCTCCTCCAAGGCCATGTCCATCATGAACTCC
TTCATCAACGACATCTTCGAGAAGCTCGCCGGGGAGTCGGCCAAGCTCGCCCGCTACAAC
AAGAAGCCCACCATCACCTCCAGGGAGATTCAGACCTCCGTCCGCCTCGTCCTCCCCGGC
GAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCAGTCACCAAGTTCACCTCCTCC
TAGACTGCCGATGCGTCCGTCGCCTGAAGTAGCAGATGCGGTTGTCTGCCGTTGTCTCCT
CTTAGTGGTTGCTGACCTGGTTATCTATCTGCCACTGCCAGTAGAAGTAGTAGTAGTTGT
TGTCTGAATGCTGTATGGTTGCCAACACTTTGTTGGCTCGTTCGTTGTATGAGCTGAAGC
TGCCGATCTATCTGAATGTTTATGTTGCAAGCAGTACTATTACTGAATTTCATGGGAAGA
AAAAAAAAAAAAAAAA

Homology of Contig U35_13998 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g05630.1	154	5e-62	protein\|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g27760.1	154	1e-67
Arabidopsis v10	AT3G46030.1	145	3e-55	\| Symbols: HTB11 \| Histone superfamily protein \| chr3:16913614-16914051 REVERSE LENGTH=145