barSeed - Barley Seed Development Database

Probe CUST_12984_PI390587928

Source Contig U35_22018

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12984_PI390587928	Hv_44K_v2	CAGTATCAATAAATTTTGGGGGTACCGATCACAATCCTGAATTCCTGATAATTTATCACA	1021	GeneList: paleturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.413	2.626	1.127	0.823	0.378	0.520
Raw	901.114	696.100	267.234	316.522	49.873	73.558

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55892.2	2715	2e-24	40 - 99	100	60 / 60	minus	ABC18593
MLOC	MLOC_55892.3	2782	2e-24	40 - 99	100	60 / 60	minus	ABC18593
MLOC	MLOC_55892.4	2752	2e-24	28 - 87	100	60 / 60	minus	ABC18593
MLOC	MLOC_55892.1	2677	2e-24	57 - 116	100	60 / 60	minus	ABC18593
MLOC	MLOC_55892.5	2641	2e-24	20 - 79	100	60 / 60	minus	ABC18593
JLOC1	JLOC1_36096.3	2477	8e-25	2378 - 2437	100	60 / 60	plus
JLOC1	JLOC1_36096.2	2617	8e-25	2518 - 2577	100	60 / 60	plus
JLOC1	JLOC1_36096.1	2615	8e-25	2516 - 2575	100	60 / 60	plus
Harvest21	ABC18593	1097	3e-25	1022 - 1081	100	60 / 60	plus	ABC18593
Harvest35	U35_22018	1097	3e-25	1022 - 1081	100	60 / 60	plus

Contig Sequence (1097 bp)

>U35_22018 1097 Hv_44K_v2
GGATGAGCTGGTTTCAAGTCCAAAAGAAGCTTTTTCCCGGGCCTCTGCTGATAGGAGAAA
CGAACTTATGAAAAGTGGGCTATCTCATTCGTATTCAACACACGGAGATAAAAGTATGGT
GAAATTGAATAAACTGACAGAAAGCAACAGAAGGTTTGGCAGTCGGCGAACCCCTGAACC
TCCTGCGATCAACCAGGGTGCAATCAACCAGCTGTCAGAACAGATATCGACATTGAATGA
GAGGATGGATGAGTTTACCTGTCGGGTTGAAGATCTTAACTCAAAATTTACACTGATAAA
ATCTTCACCAAGTCAGCAAAATTTAGCTCCTCCAAGTGATACTCGTAATGGTTCCGCACC
TACCAATCTCTTTGTTTCTCAGTTGGGTAATGGCACCCTTATACCTCACTCATCATCATC
AAACCAACTTTCAAAAGAGTCTCCATTGACGGAAGAGATCATGGTCTTATCAAGAGGTCA
GCGCCAAGTAATACATCAGCTCGACAACCTCACTAACCTGCTTCATGAGCATTTGGTCTT
GACCCGCCAAGGAAACACCACGAGCAGGAACCGTATCCAGGAAGGAATCGACATGGCAAT
CTGCCCGTTGATAATCCTGACAATTGGCAGTGTCGGTTACTTTGTGTTCAGGAATCTCAA
CCGGACATGACCAGAGTGAACCCGATGAAGTGCGCAGTTCTGATATCTGAAGTTCGCCAC
CAAGTTGAGTCAAGAACCAGAGCAGTCCAGACAGTCTTGATTGATCTTCAGTACCCAGAG
CCCAGACTCCAAAACTGTTACTTTCTCTTGAAGTTATAGTCGGTCCTTGAGTCAGACACC
ATGACGGGGATCATATCTACGTAGTAGGTGTAGATTACAGTTTTTGAGATAGGCGAAAAC
TCATATATACCAGCGCAAGCAACAGAGTTTAGTCTTGATATTGAGCGGAGATACTTCGTA
AGCTTGGAGAAAAAACAATGTACTGGAGGCATACAATGCCTGTAGTCGATACTGGAAGTC
CCAGTATCAATAAATTTTGGGGGTACCGATCACAATCCTGAATTCCTGATAATTTATCAC
AAAAAAAAAAAAAAAAA

Homology of Contig U35_22018 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g47860.2	653	9e-110	protein\|uridine kinase, putative, expressed
Brachypodium v1_2	Bradi3g52910.1	654	6e-133
Arabidopsis v10	AT1G26190.1	674	6e-55	Phosphoribulokinase / Uridine kinase family \| chr1:9057285-9060433 REVERSE LENGTH=674