barSeed - Barley Seed Development Database

Probe CUST_12959_PI390587928

Source Contig U35_23260

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12959_PI390587928	Hv_44K_v2	AGAGAGCCTTTTTGAAGGGGGTGTTGTAAGAACATTTCCAACCAATTAAGAAAACCGTAA	1009	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7137.1	1856	7e-23	1601 - 1660	98	59 / 60	plus	ABC17102 ABC26328
JLOC1	JLOC1_4705.1	1919	4e-23	232 - 291	98	59 / 60	minus
Harvest21	ABC17102	1069	3e-25	1010 - 1069	100	60 / 60	plus	ABC17102
Harvest35	U35_23260	1069	3e-25	1010 - 1069	100	60 / 60	plus

Contig Sequence (1069 bp)

>U35_23260 1069 Hv_44K_v2
GGCACGGGCTAGNGCTCANCTACGACGCAGNACAGACTGACACCGCGCTTGACAAGTACG
TGCCCTTCATCATGTCCACAGCGGAGGAGCTGCGACGGCAGGACCGCGCGCTCAAGATCT
TCATGAACGACTACGGCTATGGGTCGTGGCAAGGCATCAATCACCACCACCCGGCCTCGT
TCGAAACGCTCGCCATGGATCCAGGGCTGAAGCAGGCTGTCCTGGACGACCTCGACCGGT
TCCTGAAGAGGAAAGAGTACTACCAGCGAATCGGGAAGGCTTGGAAACGCGGCTACCTGC
TCTACGGCCCCCCTGGCACCGGCAAGTCCAGCCTGGTCGCTGCCATGGCCAACTACCTAC
GTTTCAATCTCTACGACCTCGATCTCTCGAGTGTGCACGACAACTCATCACTGCAGAGGC
TTCTCATCGACATGTCCAACAAGTCCATCCTTGTCATCGAAGATATTGACTGCAGTTTCG
ACACGATGTCGAGAGAGGATCGCAAGGACCACTCCTTGGAGGACGAGGACGACGGCCGAG
ACTACCGTACGGGAGGTGAGCGCAAGATAACACTGTCGGGGCTGCTCAACTTCATCGACG
GGTTGTGGTCGACTAGCGGCGAGGAGCGCATCATGATCTTCACGACCAACTATAAGGATC
GCCTTGATCCGGCGCTGCTGCGGCCGGGGCGCATGGACATGCATGTATATATGGGTTACT
GCTGCTGGGAGGCATTCAGGAAGCTGGCCTGGAACTATCACCTCATTGACGGCCACCCTC
TGTTCCCAGGGATACAGGAACTACTTGCGGTGGTGGAGGTAACGCCCGCCGAGGTGTCTG
AGATGCTGCTACGGAGCGAGGACGCCGATGTTGCGCTACAGGTACTGATGGAATTCCTCC
AAGAACGGAGTGGGGCAGTAAAAGAGCCGGAGGACAAGCACGATGCGTAGCATGGTAGTA
GCAGAGAAGAGACATGGTCTGTGTGTTCAGAGAAAACAAGGACAAATGCAGAGAGCCTTT
TTGAAGGGGGTGTTGTAAGAACATTTCCAACCAATTAAGAAAACCGTAA

Homology of Contig U35_23260 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g38800.1	530	3e-149	protein\|AAA family ATPase, putative, expressed
Brachypodium v1_2	Bradi1g26130.1	505	5e-168
Arabidopsis v10	AT3G50940.1	451	1e-103	P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr3:18934086-18935528 FORWARD LENGTH=451