barSeed - Barley Seed Development Database

Probe CUST_12951_PI390587928

Source Contig U35_23268

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12951_PI390587928	Hv_44K_v2	TGACGCTTCGGTTGCGCTGTCTGTTTCATCATGTGAGTGAGCACAAATTTTCTAGTTAAA	584	GeneList: paleturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	11.378	6.007	1.371	0.632	0.162	0.211
Raw	588.610	532.764	101.426	79.123	5.512	8.586

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC17977	657	3e-25	585 - 644	100	60 / 60	plus	ABC17977
Harvest35	U35_23268	657	3e-25	585 - 644	100	60 / 60	plus

Contig Sequence (657 bp)

>U35_23268 657 Hv_44K_v2
GGGCTGCAGGAATTCTTCACGAGGCAGATATGACGGAAGTTGCCAATTCGTCTTGCTCTG
GAGATGGTGGCCAATCCATCACTAAGAGGAAGAGATTGAGGGAGGCACTCCTACGGCACA
ATTCATACGAGGACCTTTATGAGATCTGCCGTGGGGCCCATTGGATATTCCCAAGATACA
CAGTAGTACCTTCAGTATCAGATGGAATGTACCACGCCAGCGTACGTTTGAGATGCCCTG
ATTTTGAGATGAGCATCACTGGTGGTCTTCGTCCTACCCCACACGAGGCGAAGTGCTCTG
CAGCTGCCAATATGATACTGGAGCTTCACAGGAAGGCGGAGCAAGAACAGTAGGGTACCT
GACGCAAAACCACCTTGTTAAACTCCAGAATCCGGGAAATTGCAGGTAGCTGGAACCAGT
TGTTTAGTCATTGCAACTTTGAATAAGAATTCTTGAGATACCTAATCGTGTTGGTACCTT
GTTTAGCTATTTACCTTCCGGAGGTTGACTCCTTGTGTTGTTGTTGGTATTATGGCTGAT
TACTAAGGTCGTGATAAATCCCAGACTGTTATTTCAAAATTCTGTGACGCTTCGGTTGCG
CTGTCTGTTTCATCATGTGAGTGAGCACAAATTTTCTAGTTAAAAAAAAAAAAAAAA

Homology of Contig U35_23268 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None