barSeed - Barley Seed Development Database

Probe CUST_12936_PI390587928

Source Contig U35_11294

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12936_PI390587928	Hv_44K_v2	CTGGGAATTTGGATGTATTGTTCATCTTGCTGAGAATTTTGTGTATATTTGCTCGCTAAA	434	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.126	1.075	1.185	1.027	0.343	0.357
Raw	706.731	1063.903	1030.131	1406.124	163.184	184.523

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_17444.1	2227	2e-24	84 - 143	100	60 / 60	minus	ABC26029
MLOC	MLOC_17444.2	1045	2e-24	84 - 143	100	60 / 60	minus	ABC26029
JLOC1	JLOC1_12044.3	887	8e-25	773 - 832	100	60 / 60	plus
JLOC1	JLOC1_12044.2	842	8e-25	728 - 787	100	60 / 60	plus
JLOC1	JLOC1_12044.1	2065	8e-25	1951 - 2010	100	60 / 60	plus
Harvest21	ABC26029	539	3e-25	46 - 105	100	60 / 60	minus	ABC26029
Harvest35	U35_11294	539	3e-25	435 - 494	100	60 / 60	plus

Contig Sequence (539 bp)

>U35_11294 539 Hv_44K_v2
GCCCTTGGTCCGATTCGATTCGACCTGGGGTTGTAGGCGGCCTCCATATACAAGGACTGG
AGAGGAGGTTGACCAGGACCCCATGCCCATGACGCCGATTGCTCATCAAGGTCCCAACAC
AAGGAGAAGCGACCGCAGGTGCATCTTCAATCATTCCCAGCTCATATAGAATCCGCGGCA
GCAATAGCAGCAGATGCATCTATGAAGATGAGGAGGCAATGCCAAGCAGCAGCAACAGCA
ACTCAAGGTCCGGCCTCCTTGCGTGGCACCGAATGATGGATGTACGCCTAGTCTTCCCGG
CGATTTCGTTGTGAATCTGCAGCCACCGCTCGTTGTAGGAGAGTGACAGGAGAGTTACAG
GATTATTATTTTTAAAGAAGTTGGAAGTCCAAGTCAATGACTTGCTTTATATGTCTGTTG
TAATGTCAAATTTTCTGGGAATTTGGATGTATTGTTCATCTTGCTGAGAATTTTGTGTAT
ATTTGCTCGCTAAATTTATTAATCAAATGCTAGAATTCATGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_11294 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None