barSeed - Barley Seed Development Database

Probe CUST_12888_PI390587928

Source Contig U35_35266

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12888_PI390587928	Hv_44K_v2	CATTTCAAATGAGTGTTGTATGCACAATGAAATCTCTCCGGCTTACATTACGGTTTTGTT	372	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54115.2	1655	2e-24	1583 - 1642	100	60 / 60	plus	ABC10671
JLOC1	JLOC1_34823.1	869	8e-25	785 - 844	100	60 / 60	plus
Harvest35	U35_35266	432	3e-25	373 - 432	100	60 / 60	plus

Contig Sequence (432 bp)

>U35_35266 432 Hv_44K_v2
GGCGAATTGGGCCCATTCGAAAATGCTCGAGCGGCCGCTGAGTACCCCACGTACGCTCTC
AAGGTGGGGGAGATCAGCGACATCATCGACACCGAGAGCGGGGTTCACATCACCCTGCGT
ACCGCATAGGGAGAAAGAAGCCCACGCCGTGGCCGTCACAACACCCTCTGATATTATTTA
GCACTTTTCCTTCTTCCAGGGCATGCGGCTCTTCTCATTCTGGCAGCCCAAAACTTGAAT
GAATGAAGAAAAATGTCTTGTATCGTCTCGCCATTTTGCTACGGTTGATACATATATCAC
ATGTCAGTGTTTGAGCTTATGATGTCTTGATCAGGAAATGTTCTTTTTCTCTTCATTTCA
TTTGTGATAAATCATTTCAAATGAGTGTTGTATGCACAATGAAATCTCTCCGGCTTACAT
TACGGTTTTGTT

Homology of Contig U35_35266 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None