barSeed - Barley Seed Development Database

Probe CUST_12886_PI390587928

Source Contig U35_35268

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12886_PI390587928	Hv_44K_v2	ATATACATCCTCAAACTGATCCAGGATGAAGTAAAGCTTTGGGTCACGGCAGAAGCGAGA	92	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6823.4	1785	2e-24	1351 - 1410	100	60 / 60	minus	ABC16122
MLOC	MLOC_6823.8	2393	2e-24	1785 - 1844	100	60 / 60	minus	ABC16122
MLOC	MLOC_6823.5	2395	2e-24	1961 - 2020	100	60 / 60	minus	ABC16122
JLOC1	JLOC1_4466.1	2661	8e-25	1970 - 2029	100	60 / 60	minus
Harvest35	U35_35268	819	3e-25	93 - 152	100	60 / 60	minus

Contig Sequence (819 bp)

>U35_35268 819 Hv_44K_v2
GGGCGAATTGGGCCCTTTCGAAGATGCTCGAGCGGCCGCTCGAACCACGGTAAACGACAA
CTACTCTTGCGGCATATGATGTTGCTCAGGTGTCTCGCTTCTGCCGTGACCCAAAGCTTT
ACTTCATCCTGGATCAGTTTGAGGATGTATATGGGTGGCGTATATTTTTTTCTGAAGACT
ATAGCGTTTCTCCCATTCCAGATTACCCAACTGACAAGCATAGTCAGTGAAGCACAAGCA
TAGTCAGTGAAGCGATGAGATTACCCAACTGACAAGCATAGTCAGTGAAGCACAAGCATA
GTCAGTGAAGCGATGGCCTTCCTGTTCATCGTGTTTGGTTTTGACATGCTTGTCCACCAA
TACTTGACGTTCTGCTCAGTCAGCCATTGGCGAGTGTCAAGTGACCATCAAGCTCCTTTG
TCAAGTGAATGAAGATTAACAAACCAGATTCATGTTACAACAGGATGAGCATTTTGCTGT
ATAACCAGTTTACCAGCCATTATCCATGATCTGCACGCTTGATCCAGTGTATTGCCATTA
GTTTACGAGAAAGCTGTACTGTTTTTCCAGCGGCCGCTGGAAGCTCAGGCCGTGAACTAG
AGGCTGTTAAATCCTTCGATACTAACATTGGAACAAGTACTGTATGCATTCTCAGTCAAT
CTGTGTAACTTCTTGCTGTTTTCTGTCAGCGAACTTGCTAGGGTTGTTAACTAATCCTAT
TTCTTGAAGAGATGGTTCTGCTCATTCTGTCCGTGTATCTCTTGACATGGAATTTGTGTT
TACGGTAGCATGGATGTTTCTGTAGCGGCCGCTCATGCC

Homology of Contig U35_35268 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None