barSeed - Barley Seed Development Database

Probe CUST_12861_PI390587928

Source Contig U35_4797

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12861_PI390587928	Hv_44K_v2	GGAAAGGAAAAGATTTGAGCTTATTGGCATTTGGTTGATGGAGATGTGGTGCATATGTTC	852	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.166	2.138	1.135	0.780	0.379	0.340
Raw	118.375	190.992	84.395	94.663	15.293	15.298

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10146.1	2404	2e-24	1375 - 1434	100	60 / 60	plus	ABC11172 ABC20034 ABC48971
MLOC	MLOC_10145.1	2151	2e-24	979 - 1038	100	60 / 60	plus	ABC11172 ABC20034 ABC48971
JLOC1	JLOC1_6615.2	1078	8e-25	955 - 1014	100	60 / 60	plus
JLOC1	JLOC1_6615.1	1100	8e-25	977 - 1036	100	60 / 60	plus
Harvest21	ABC11172	883	3e-25	821 - 880	100	60 / 60	plus	ABC11172
Harvest35	U35_4797	915	3e-25	853 - 912	100	60 / 60	plus

Contig Sequence (915 bp)

>U35_4797 915 Hv_44K_v2
GGGGGAACTTCACAAAAAGCTGTCTCCAAGTCGCTGTTTTCGCTATCTGCAGGCAGCTTG
AGCTCTCCGCCCTCCTTGCTGCCTGCGTCCGCTTTCGTCCTCCGTCTCCTCCTCGTCTTC
CCCGCTCCGAGGATGGAGGAGCCGCCGCGGTACAAGTTCGGGCCGTATAAGATCGACGCG
AGGGAGGTCTTCCACGCCACGCCCCTCTCGTACGCCATGGTCAACCTCCGCCCCCTCCTC
CCTGGTCATGTCCTTGTGTGCCCCAAGCGCGAGGTGAAACGATTTGCTGATCTAAGTTCT
GATGAGACTGGTGATTTGTGGGTAATTGCAAAGGAAGTTGGTGCAAAGCTCGAGCAGTAC
CACAAAGCTTCCTCCATCACATTCGCGATTCAGGATGGTCCTCAGGCTGGCCAAACAGTT
GCCCATGTACACATCCACGTCATCCCCAGGAAGAAAGGAGATTTTGAGAAGAACGATGAA
ATATATGATGCGATTGAGGTGAAAGAGAAGGAAATGAAGGAGAAGCTTGACCTAGACGTC
GAAAGAAAAGATAGAAGCATGGAAGAAATGGCTCATGAGGCCACCGAGTACCGCGCTCTT
TTCTTCTAGCCAGACAAATGTATCTCTGATGAACTCTCTAATTTTCTGCCACTCTTGCCT
AAAACTAGCCTTACGATTGTTTGTCCTTGATTGCGCGGTGTGGTTCGTATTGTCCACGGA
CCTGGCAGCACCAGTCCAAATCTGATGTAGTGATATTGCAAGACCGCTTGTTCATCGCGC
TGGTTATTCTTCGTTGCGTGACTACCGAACTTATTTTCTTGTTCCCCACTGATCTTCCTT
TTGGAAAGGGGAGGAAAGGAAAAGATTTGAGCTTATTGGCATTTGGTTGATGGAGATGTG
GTGCATATGTTCTGC

Homology of Contig U35_4797 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g02730.1	207	2e-79	protein\|histidine triad family protein, putative, expressed
Brachypodium v1_2	Bradi4g44190.1	153	3e-73
Arabidopsis v10	AT5G58240.1	180	2e-68	\| Symbols: FHIT \| FRAGILE HISTIDINE TRIAD \| chr5:23558349-23559313 REVERSE LENGTH=180