barSeed - Barley Seed Development Database

Probe CUST_12833_PI390587928

Source Contig U35_19506

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12833_PI390587928	Hv_44K_v2	TGACGATGGTTTGTGCTTGTTAAAACTGAATGAATGCGAAGGTTAATCGGTTTCAAAAAA	882	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10456.4	1039	3e-21	980 - 1033	100	54 / 54	plus	ABC11318
JLOC1	JLOC1_6848.1	1091	2e-21	981 - 1034	100	54 / 54	plus
Harvest35	U35_19506	953	3e-25	883 - 942	100	60 / 60	plus

Contig Sequence (953 bp)

>U35_19506 953 Hv_44K_v2
GCGCCCTCGCATCGCCGCCGAAACCCATCGCTCTCGCTCTCCGCCCCGTCGATCCGCTCC
GACGCCAGCGCGGGTTCCTGCTCCGGAGGTTTCGGCCGAAATGGCTCTCCCCAACACCCA
GCCCGTGGACTGCCCCAACTTCAAGCTCGTCCTCGTCGGCGACGGCGGCACCGGCAAGAC
GACGTTCGTGAAGAGGCACGTCACCGGGGAGTTCGAGAAGAAGTACGAACCCACGATCGG
CGTGGAGGTGCGGCCGCTGGACTTCCAGACTAGCCACGGCAAGATCAGGTTCAGCTGCTG
GGACACGGCCGGACAGGAGAAGTTCGGTGGCCTCCGTGACGGATACTACATCCATGGCCA
GTGTGCAATCATCATGTTCGATGTCACCTCCCGGCTGACCTACAAGAATGTTCCCACCTG
GCACAGAGACATCTGCAGGGTGTGCGAGAACATCCCGATCGTCCTGTGCGGCAACAAGGT
GGACGTGAAGAACCGGCAGGTGAAGGCCAAGATGGTGACCTTCCACCGGAAGAAGAACCT
CCAGTACTACGAGATCTCTGCCAAGAGCAACTACAACTTCGAGAAGCCTTTCCTCTACCT
TGCCAGGAAGCTGTCAGGGGACATGACCCTCCGGTTCGTCGAGGAGACGGCCCTCCTTCC
CGCCGACGTAACCATCGACCTCGTTGCTCAGCAACAGATTGACGCAGAGATAGCTGCTGC
GGCGGCATTGCCCCTCCCGGATGACGATGATGACAACATCATGGACTGAGCTGATCAATC
GGAGGATGTGCCTAGTTTAGTAGCAGCATCTATAGTTTCAAACTCTTATAAGAAGTGAAG
TGAAACTTCTGTATCCGTATCAGACTTTCAGTAGGCATTTGATGACGATGGTTTGTGCTT
GTTAAAACTGAATGAATGCGAAGGTTAATCGGTTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_19506 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g39875.1	227	2e-127	protein\|ras-related protein, putative, expressed
Brachypodium v1_2	Bradi1g36820.1	222	2e-135
Arabidopsis v10	AT5G55190.1	221	1e-123	\| Symbols: RAN3, ATRAN3 \| RAN GTPase 3 \| chr5:22392285-22393957 FORWARD LENGTH=221