- Probe CUST_12815_PI390587928
- Source Contig U35_33808
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_12815_PI390587928 | Hv_44K_v2 | GGGTGGTGGGTTGATACTAATAATTCAATAATATGTTGTTTTACCTTGTGCCTTGTTCAG | 462 | GeneList: None MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 1.252 | 1.111 | 0.994 | 0.952 | 0.983 | 0.919 |
Raw | 18.325 | 21.877 | 19.273 | 24.308 | 10.638 | 11.210 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_13735.1 | 2088 | 2e-24 | 1917 - 1976 | 100 | 60 / 60 | plus | ABC12031 |
MLOC | MLOC_13735.2 | 2052 | 2e-24 | 1881 - 1940 | 100 | 60 / 60 | plus | ABC12031 |
JLOC1 | JLOC1_9325.2 | 647 | 8e-25 | 481 - 540 | 100 | 60 / 60 | plus | |
JLOC1 | JLOC1_9325.1 | 613 | 8e-25 | 447 - 506 | 100 | 60 / 60 | plus | |
Harvest35 | U35_33808 | 545 | 3e-25 | 463 - 522 | 100 | 60 / 60 | plus |
Contig Sequence (545 bp)
>U35_33808 545 Hv_44K_v2 CTAATGCATGCTCGAGGGTCTCCCTATTAGGACATAGATCGCTATCATGCGGGGCAAGGA GGCGATGCAAGTAGCAACAATGATGGTGATCCTTCAAACATACGTCAACACTTAAAGTGT CTATTCAAAACAATGCTGATGACTCAGATGCTAATAAGCTAGAGAAACTGGAGAAATTGC TGACAGATGCTTTGAGGGATACAAAATCCAAGAAGGTGCACTTCAATGGCTCTACTGACA CCTGTAATCAGATGTTGGCGCAACAAAATAGCGGTGCAAGCACTAGGAGTGGCGAGAACT CCAAGCGAGGAAGGAGTTGAGAGCAGTCATGTGCTGTGTCTACATTTGGTACAAGCAAAG CTCTGTTGCTGATGCAACACTCTTCCCCAGTTACTGGGCATGAAAGAGTTGTCAGGGCTG CTGCTTGTAAGGCGTATGGCAGTAAGGGCAAATTCAATAAAAGGGTGGTGGGTTGATACT AATAATTCAATAATATGTTGTTTTACCTTGTGCCTTGTTCAGACTGTATGTGAACCTATC AATCT
Homology of Contig U35_33808 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |