barSeed - Barley Seed Development Database

Probe CUST_1267_PI390587928

Source Contig U35_30954

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1267_PI390587928	Hv_44K_v2	TTTTGTTCTGAAACTAGAGTTCCTCGTACGCAGCATGCATGCTTCCCCAAGTGGATATAT	539	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63612.4	3472	2e-24	731 - 790	100	60 / 60	plus	ABC19031
MLOC	MLOC_63612.9	1354	2e-24	938 - 997	100	60 / 60	minus	ABC19031
MLOC	MLOC_63612.7	1564	2e-24	1061 - 1120	100	60 / 60	minus	ABC19031
MLOC	MLOC_63612.1	2071	2e-24	1565 - 1624	100	60 / 60	minus	ABC19031
MLOC	MLOC_63612.3	1963	2e-24	1552 - 1611	100	60 / 60	minus	ABC19031
JLOC1	JLOC1_41678.7	1442	8e-25	365 - 424	100	60 / 60	plus
JLOC1	JLOC1_41678.6	1441	8e-25	361 - 420	100	60 / 60	plus
JLOC1	JLOC1_41678.5	2006	8e-25	360 - 419	100	60 / 60	plus
Harvest21	ABC31086	635	3e-25	540 - 599	100	60 / 60	plus
Harvest35	U35_30954	635	3e-25	540 - 599	100	60 / 60	plus

Contig Sequence (635 bp)

>U35_30954 635 Hv_44K_v2
GAACCACCAACCATGGACGCAAGCTGGAGCGGCGGCGTTAACCTGAACGCCCCTCCGCCC
GCCGGAGGCGACTGGCGCGCCGAGCTCCAGCCCGAGGCGCGCAGCAGGGTCGTCAACAAG
ATGTATGTAGGGACTCTCGCCGATCTACTCTGCTTTCCCCTTCATCTAATCCATATTCAT
TCGATCCTTCTTCCGCGTCTGCTTTCGGTCTCCCCAGGGAATTTCCCGCGTGTTTGCGGG
TCGATTTCCTCGTCGATCCATCCGATAGAGCTTCGATCTAGCCATATATCCTCCTTAGCG
GCAGCAAAAGGTCAACTTCCTACTGCACCTGCTCTGCTTTCAGTCCAGCCTAATAATTAC
AGTACTTCATTTAACTAGCATTGAGTTATGTCTGAACAATTTAGCGCAAGTTTACTCACC
AAGAGGTGCAAATTTTTTCATTGCGCACAGCAATTCAGTAGCATGACACACATGTCACAG
CTTTTGATCTCCTAGGGGAAACCATGCTACATTAGAATTAGTACTGTGTCGGGATACAAT
TTTGTTCTGAAACTAGAGTTCCTCGTACGCAGCATGCATGCTTCCCCAAGTGGATATATA
CTCCTCACACGATCACACGCCATGACCAAATCGAT

Homology of Contig U35_30954 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None