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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_12670_PI390587928Hv_44K_v2CGCTAAAGTTCTTGTTTGGGAAGCCAATAACTATGTTTGTAAAAAACAATGTATTCCGCC834GeneList: saddlebrown
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.1700.1960.8652.7531.5522.795
Raw 3.2637.30835.841155.59636.46269.902



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_10538.19602e-2426 - 8510060 / 60minus ABC19418
MLOCMLOC_10538.230612e-2426 - 8510060 / 60minus ABC19418
Harvest21ABC194189493e-25835 - 89410060 / 60plusABC19418
Harvest35U35_244629493e-25835 - 89410060 / 60plus



Contig Sequence (949 bp)

>U35_24462 949 Hv_44K_v2
ACCTCTCATAACTTTCTCCTTGTTTTTCTCTCCGCTCTATGATGTTGACTCCATCCTTCC
CGAAAGCAAATCCCCCTAGGATTCCCCAAGGTCATATCCCGCATGGATACCCCAAGTTCA
TACACGCGCCGACTAGATGCCTCGTCTCTCTTTTGCCGCAAATTGGCCGCCGCCGCTGCA
GGTAGCCATGGCACAAGACAAGTCATGGAGCACCCATTACCGCTGCAAAGGAATTGCAGC
CTAAGGATGTTTCTCCGTGGGTTGCGTGTCTACGGCCGTGGCGACTGGAAAAACATATCC
AAGCATTTTGTCACTACTAAAACTCATATCCAAGTCTCAAGCCATGCACAAAAGTACTTC
AAGAGGATAAATAAAAGGGCATCGTTCGGGACACAACGTTATAGCATTAATGATGTTGGA
CTAGATGATGATGACCTATGGGCGGTGAATAATAGTTCTAGTCCCTCGCAAATGATGGGT
TTCAATGGGCTCAACAATGAAACAAGCTTCGGCATGCACGATCCGACAAGCTCTTCCATA
GTCATGAACAACCAACCTCACTTGTGGCCACCTGTCACATATAGTCAACAAGAAAATCAA
CAACCAATGTGGAGTGAGCATCAGATGTTGGGGTCTACTACAGTTGTAATGGGCGACATG
AGAAATTCCGCTCCACCAAGTCAATAAGCATTGACTTGTTTTCTTCTTGTCAATATATGA
ATAAGATGTAGTCGATCATAGGTTTGGGAGATGTTTTGTAAGCTATAAATTAAGGTAAGT
GTATAAACAAATTTCCCTCCAAAAGATGGCAACGCAATAAGTTGAAGGCAGTATCGCTAA
AGTTCTTGTTTGGGAAGCCAATAACTATGTTTGTAAAAAACAATGTATTCCGCCCTATAT
ATGTACCATTATATTAACATGCTGTTTTTTTCAAAAAAAAAAAAAAAAA



Homology of Contig U35_24462 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None