barSeed - Barley Seed Development Database

Probe CUST_12661_PI390587928

Source Contig U35_24469

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12661_PI390587928	Hv_44K_v2	GTACAAGAACGTTCTGTCATTTCTGGAGTTAATTGCAGAAAACTTGTTAGGATTGTAAGA	918	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.974	0.813	0.720	0.591	1.345	1.198
Raw	3.428	3.592	3.438	4.180	3.845	3.643

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36363.1	1187	7e-23	1115 - 1174	98	59 / 60	plus	ABC02113 ABC02115 ABC18641
JLOC1	JLOC1_23402.1	1195	4e-23	1104 - 1163	98	59 / 60	plus
Harvest21	ABC18641	994	3e-25	919 - 978	100	60 / 60	plus	ABC18641
Harvest35	U35_24469	994	3e-25	919 - 978	100	60 / 60	plus

Contig Sequence (994 bp)

>U35_24469 994 Hv_44K_v2
GTGACGGCCGCCGTGAGGAGTGAGCGCCGCATGGGAGCGTCGCTGCTCAGGCTGCATTTC
CACGACTGCTTTGTCCAAGGCTGCGACGCGTCCGTACTGCTGAGCGACACGGCCACCTTC
ACCGGCGAGCAGGGGGCAGGTCCCAACGCCGGCTCCATTCGAGGCATGAACGTCATCGAC
AACATCAAGGCGCAGGTGGAAGCCGTGTGCGCGCAGACTGTCTCCTGCGCCGACATCCTC
GCCGTCGCCGCCCGCGACTCCGTCGTCGCCCTGGGAGGCCCTTCGTGGACCGTTCCCCTG
GGGAGGAGGGACTCGACGACCGCGAGCATGTCGCTGGCCAACAGCGACCTGCCGCCGCCA
TCCCTCGACATCGCCAACCTCACCGCCAACTTCGCCGCCAAGGGGCTCAGCGTGACCGAC
ATGGTCGCCCTCTCCGGCGCCCACACCATCGGGCAGGCGCAGTGCCAGAACTTCCGGGAC
AGGCTCTACAACGAGACCAACATCGAGACGGCCTTCGCGACATCTCTCAAGGCCAACTGC
CCCCGGCCGACCGGGTCCGGCGACAGCACCCTGGCACCGCTGGACACGACGACGCCCAAC
GCATTCGACAACGTGTACTACCGCAACCTGATGTCACAGAAGGGGCTCCTGCACTCCGAC
CAGGTTCTGATCAACGACGGACGCACCGCCGGCCTGGTGCGGACGTACTCGTCGGCGTCG
ACGCAGTTGAACAGGGACTTCGCGGCGGCCATGGTGAAGATGGGGAACATCAGCCCGCTC
ACCGGGGCGCTGGGGCAGGTCAGGCTCAGCTGCTCCAGGGTGAACTAATTAAGCTAGGGA
TCCAGCTAGAATCCCGGGCGATCAAACGGCGACGTACACAATAAGGATGTGGAGTTATTG
TATTTGTGTACTGTTCATGTACAAGAACGTTCTGTCATTTCTGGAGTTAATTGCAGAAAA
CTTGTTAGGATTGTAAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_24469 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g47990.1	319	2e-157	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi1g17877.1	321	4e-146
Arabidopsis v10	AT5G05340.1	324	5e-123	Peroxidase superfamily protein \| chr5:1579142-1580819 REVERSE LENGTH=324