barSeed - Barley Seed Development Database

Probe CUST_12653_PI390587928

Source Contig U35_50737

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12653_PI390587928	Hv_44K_v2	GTCAACTGTCAAAACAAAAGGTGCATGTCAGTCCCTCCAAAAGGAAAAAATTCAATAAAA	54	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_42561.1	1382	7e-23	1014 - 1073	98	59 / 60	plus	ABC04548 ABC04552 ABC43241
MLOC	MLOC_42561.2	1476	7e-23	1009 - 1068	98	59 / 60	plus	ABC04548 ABC04552 ABC43241
MLOC	MLOC_42560.2	985	7e-23	517 - 576	98	59 / 60	plus	ABC04548 ABC04552 ABC43241
JLOC1	JLOC1_27559.2	1468	4e-23	1004 - 1063	98	59 / 60	plus
JLOC1	JLOC1_27559.1	987	4e-23	517 - 576	98	59 / 60	plus
Harvest35	U35_50737	855	3e-25	55 - 114	100	60 / 60	minus

Contig Sequence (855 bp)

>U35_50737 855 Hv_44K_v2
TTTTTTTTTTTTTTAGTAGTTTGTATGAAAATGATTAGCATCATGCAATAACAATTTTAT
TGAATTTTTTCCTTTTGGAGGGACTGACATGCACCTTTTGTTTTGACAGTTGACACTCCT
ATGCTCGGTCGACGTGAAGCAGATATCAGAAATAAGTAAAGAATTATCTTCAAAGTTCTT
TGGAATATTATGTTACTTTCCTTCTACATATACTAACCGATTTTTTGCGGCAATCATGTG
GCAAAACAATATGCTTCTATTTGAAGATAGAGTTTATTCATTAGGACTTTAATGTTTGCA
TAACCTGATCAATCTACAATGTTATAGTTTGAACCCACCAAAATAACCATACGGAAATTT
CCCTCTTATAGGGAACCATTGCTCCAGCAGCTGGACTACGCGCCCGCCACCATATCCTCT
CTCGAAGAGGCGCAGAGGTGCACCGCACCGTGCCCGTCGTCTTCCATTTTGTTCAGCAAC
TTCCCTTCTTGAAAGCACATTCTGAAGGCAGTGCGTGGTGACTCATGTGTGCGTGCAGGT
AGTAAAGGCGGTGGGTGGAGCGGTCAGGTGCATCCATGGATGACTTTCTATAGGTGTTCT
TCAGGAACTCGACAAAGAATGATCATTGTGAGTAAGCATCAATTTTTGAAATAATTAGTG
TGTCTTATGTTCAGAGCTACCGAACAAGAGGCGATCACACTGCTTCTGAATCTTTTTCTG
AGCACATCTTGGAAAGGTTGTTTGTATCTAACAGGATACATGCAAGCAGAAATTTACTTA
TGTCCAGGCTCGGAAATGCTCATTGGGGAGGACTGTGCAAACTGAATTCGCCTCACCGTT
TGATCTTGAAATATC

Homology of Contig U35_50737 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None