barSeed - Barley Seed Development Database

Probe CUST_12640_PI390587928

Source Contig U35_5011

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12640_PI390587928	Hv_44K_v2	AGAATGAGCTCAATGTAGTTACTTTATGTCCTTGTATTGTTTTTGGGCCACAATTGCAAC	591	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60115.1	1445	2e-24	721 - 780	100	60 / 60	minus	ABC08979 ABC11338 ABC24449
JLOC1	JLOC1_39171.1	1575	8e-25	754 - 813	100	60 / 60	plus
Harvest21	ABC11339	714	3e-25	592 - 651	100	60 / 60	plus
Harvest35	U35_5011	714	3e-25	592 - 651	100	60 / 60	plus

Contig Sequence (714 bp)

>U35_5011 714 Hv_44K_v2
GCGAGCCATCCCGTAAGGCCGCAAGTGAGGGTGGGTTGGAGGACAGGAGGAGGATGGCAC
CACCGTCGCCGTCGCCGCGGGTGTGCGTGACCGGTGGCGGCGGATTCATCGCATCGTGGC
TCGTCAAGCTGCTCCTCTCCCGGGGCTACGCCGTCCACGCCACCGTCCGCGACCCATGTG
ACCAGAAGAACGCGCATCTGATGCAGCTGGACGGGGCGGCGGAGAGCCTGAGCTTGTTCA
AGGCCGACGTGCTCGACCGCGCCGCGCTCGCCGCCGCCGCCGCCGGTTGCCAAGGCGTCT
TCCATGTCGCCTCCCCTGTTCCCGCGGATAAGACCGTCGACCCTGAGTCAGAAATCATGG
TGCCTGCCGTGAAGGGCACCTTAAATATTCTTGAAGTTTGTTCATCTCTGAAGGTTCAGA
AGGTTGTGGTGGTGTCGTCCACTGCTGCTGTTCATTCTAACCCCAACTGGCCTCAGGGTA
AACCCAAAGACGAGAGTTGCTGGTCCGACAGAAAAATATGCATGGAGAAGGAGGCCTGGT
ATACTCTTGCTAAAACTGTTGCTGAAGAGACAGCTTGGGAGTATGCAGAGAAGAATGAGC
TCAATGTAGTTACTTTATGTCCTTGTATTGTTTTTGGGCCACAATTGCAACCTGTTGTCA
ACACCACCAGTGAACTCCTCATCTATGTCATAAAAGGAGGTCCTAATGCGTTGA

Homology of Contig U35_5011 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g31502.2	283	9e-102	protein\|dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi4g33886.1	342	2e-108
Arabidopsis v10	AT1G76470.1	325	8e-64	NAD(P)-binding Rossmann-fold superfamily protein \| chr1:28689955-28691405 REVERSE LENGTH=325