barSeed - Barley Seed Development Database

Probe CUST_12538_PI390587928

Source Contig U35_623

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12538_PI390587928	Hv_44K_v2	ATGTTCGTTGAGTCATGCAAGCGCCTTCGGATAATGAAAGGATCAGAAGCTATTGGCCTT	806	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370125	1155	2e-24	800 - 859	100	60 / 60	plus	ABC02501 ABC02502 ABC02503
MLOC	AK353651	1207	2e-24	733 - 792	100	60 / 60	plus	ABC02501 ABC02502 ABC02503
MLOC	MLOC_73033.2	708	2e-24	412 - 471	100	60 / 60	plus	ABC02501 ABC02503
MLOC	MLOC_73033.1	1360	2e-24	405 - 464	100	60 / 60	plus	ABC02501 ABC02503
JLOC1	JLOC1_48606.2	1033	8e-25	469 - 528	100	60 / 60	plus
JLOC1	JLOC1_48606.1	969	8e-25	405 - 464	100	60 / 60	plus
Harvest21	ABC49954	602	3e-25	407 - 466	100	60 / 60	minus
Harvest21	ABC02503	1347	3e-25	787 - 846	100	60 / 60	plus	ABC02503
Harvest35	U35_623	1357	3e-25	807 - 866	100	60 / 60	plus

Contig Sequence (1357 bp)

>U35_623 1357 Hv_44K_v2
GCCTCTTTGTCTATTTCCATCTGCATTTGCATCGCTCGCCTCTCAAAACAGCCAAACCGA
ACCCCAAAAGCTCGCCGGGAAACGCAGAGAAAGGAACCGAAGCAAACCCAGCAGCAGAAG
GGAGGGGCTGAGCCAGGCAGCTAGCAATGGCGGCGGACCTGGGCTTCGAGGCGACCGAGC
TGCGGCTCGGCCTGCCCGGCGGCGGCGAGGGGGAGGCCAGGAGCTCCTCCGGCAAGAGGG
GCTTCGCCGAGACCATCGACCTGAAGCTGAAGCTGGAGCCGGCCGGCGAGGAGGCGCCGG
CGGCGGAGGACCGGTCCGACGTGGCCGTGGTCGCCGCGGCGGCGGCGGAGGAGGAGCACG
AGAAGGCGGCGGCGGACGCCTGCGTGGGGAAGATGAAGAGGTCGCCCAGCCAGAGCAGCG
TCGTCACCACCGCCGCGCTCCCCGACCCCGCCGAGAAGCCGCGCGCGCCCAAGGCGCAGG
TGGTGGGGTGGCCTCCGGTCCGGTCGTTCCGGAAGAACATCCTGGCGGAGAAGTCGTCGC
CGGCGGCTGCGGCGTTCGTCAAGGTGAGCATGGACGGCGCGCCTTACCTGCGCAAGGTGG
ACCTCAGCATGTACAAGACCTACCAGGACCTCTCCAAGGCCCTCGAGAAGATGTTCAGCT
CCTTCACCATCGGAAACTGTGGAACTCAAGGGATGAACGGCATGAACGAGAGCAAGCTGA
TGGATCTGCTCAACGGATCCGAGTACGTTCCAACGTACGAGGACAAGGACGGCGACTGGA
TGCTCGTCGGGGACGTCCCGTGGGAGATGTTCGTTGAGTCATGCAAGCGCCTTCGGATAA
TGAAAGGATCAGAAGCTATTGGCCTTGCACCAAGGGCGATGGAGAAATGCAAGAACAGGA
GCTGAGGGGAGGATGTACTAAATGTTATGCAAGAATCAAAATACCTATAACCTTGCTTGC
TCATCCCTGTATCATATTCTCTGTCCTAAGTCTAAGTCTGTATCTCCTGATCAGTGAAGT
CATTTTGGGTTGTGATCTTCTCTTTTCCAGTCAGTCAGTCCCAAGTCTCATCTTGTTATA
TACATAAGAAAGAAGAAGCCAAGAACATGTGAGATGTATCTGTACCTGTCTGCCACATAA
TTGTGTCTTTTCTTTTTGCTCTGCTTGTTCTTCCTTTTTTTTTCTCTCTCTCTCTCTCTC
TTCTTATGTCTCTTCCTGGCACAAAATGCAAAGGCACCCTATTTTTCCTCTTGCGGTTTG
TCCATCAAAAGTTGTTTAATTATCAGCATGGTGTGAACAAATACTTATTGCAAGTTGTCA
AAAAAAAAAAAAAAAATATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_623 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g40890.1	278	6e-96	protein\|OsIAA30 - Auxin-responsive Aux/IAA gene family member, expressed
Brachypodium v1_2	Bradi4g02600.1	250	8e-108
Arabidopsis v10	AT3G04730.1	236	2e-75	\| Symbols: IAA16 \| indoleacetic acid-induced protein 16 \| chr3:1288993-1290415 REVERSE LENGTH=236