- Probe CUST_12529_PI390587928
- Source Contig U35_633
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_12529_PI390587928 | Hv_44K_v2 | GTGCAGGCACTTGTCTGATGAAGTAATCATAATGTATTCAGCCAGTAATCTTGAATTAAT | 503 | GeneList: black MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.309 | 0.240 | 0.477 | 2.139 | 4.001 | 2.888 |
| Raw | 108.542 | 127.091 | 212.966 | 1529.551 | 953.706 | 759.491 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_13323.1 | 200 | 2e-24 | 40 - 99 | 100 | 60 / 60 | minus | ABC02057 |
| JLOC1 | JLOC1_9007.1 | 398 | 8e-25 | 329 - 388 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC02073 | 577 | 3e-25 | 500 - 559 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC02057 | 593 | 3e-25 | 504 - 563 | 100 | 60 / 60 | plus | ABC02057 |
| Harvest35 | U35_633 | 593 | 3e-25 | 504 - 563 | 100 | 60 / 60 | plus |
Contig Sequence (593 bp)
>U35_633 593 Hv_44K_v2 GCATCTTCTTGCCTCACACACTTCACTGTTACTAAGGAGTCAGGAGTAGTTCACTTCCTT CCGGTCTCCTGCCACCAAGCTTTGCTCCGGCGAAGATGCTACGGTGACCGGCGCCTACCT CGACCAGAGGCTCGCCGCAGCAAAGCGCTGCTCCAGAGAGGCTGCCATGGCCGGAGCCAA GGCCGCGGCCGTCGCCACCGTCGCCGCCGCAGTGCCCACCCTGGCGAGTGTGAGGATGCT TCCGTGGGCCAAGGCGCACCTGAACCCCGCCGGTCAGGCGCTCATCATCTCCACCGTCGC CGGGATGGCCTACTTCATCGTCGCCGACAAGACCATCCTCTCCATGGCCAGGAAGCATTC CTTCCAGGACGCGCCGGAGCACCTCAAGAACACCTCATTCCACTAATTATTGGGCTGTAT GTACGTTTTTGCTGAAAGATACTCACGTAGTACGAGTATAATGTTCAGCGAGGCGATGCA GATCAGGCCTTGCGCCTCTATCCGTGCAGGCACTTGTCTGATGAAGTAATCATAATGTAT TCAGCCAGTAATCTTGAATTAATAATGACTTGCATCAAAAAAAAAAAAAAAAA
Homology of Contig U35_633 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |