barSeed - Barley Seed Development Database

Probe CUST_12509_PI390587928

Source Contig U35_653

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12509_PI390587928	Hv_44K_v2	GCGTGTGGTCCAGTGCTGTAACCTTTACAATCATTCTGGGATAAATAAAATTTGTTTCCG	2359	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_28234.1	2053	2e-24	1922 - 1981	100	60 / 60	plus	ABC05490 ABC05491
JLOC1	JLOC1_18971.1	2097	8e-25	1922 - 1981	100	60 / 60	plus
Harvest21	ABC36736	314	3e-25	20 - 79	100	60 / 60	minus
Harvest21	ABC05491	840	3e-25	49 - 108	100	60 / 60	minus	ABC05491
Harvest35	U35_653	2467	3e-25	2360 - 2419	100	60 / 60	plus

Contig Sequence (2467 bp)

>U35_653 2467 Hv_44K_v2
CGAGATCAAGCGGGCCCAGGCCCCCGCCGTGCCGGACCTCAACCAGGTCTTCGTCTGCGA
GGACGAGGACCAGGACGGGGCCGAGGCAGCCTCCGCTCGCCCGGGCCGCTCCGAGAGGAC
CCTCGAGGGCGAGGCCGCCACGGACGTCGCCCTAACCGCGGCGGCCGTCGCCGACGGCCT
CCGCGGCAGCCTGGAGAGCGTCCTTGTCCGTGGGAGCCACCCGACGCGCGGCGTCACCGA
CAGCGGCATCTCCGCGGTCGCCCGTGGGTGCCCCTCGCTCCGCTCGCTCGCCTTGTGGGA
CGTGCCGCTTGTGACGGACGCCGGGCTCGCTGAGATCGCCGCCGGCTGCCCCTCGCTCGA
GAAGCTCGACATCACCGGCTGCCCGCTGGTCACCGACAAGGGCCTCGTCGCCGTCGCTCA
GGGCTGCCCGGATTTGAAGACGCTCACCATTGAATCATGCTCTGGCGTTGCCAATGAAGG
ACTCAAGGCCGTCGGCAGGTGCTGCTCCAAGCTGCAGGCGGTGAACATCAAGAACTGTGC
GTATGTTGGTGACCAGGGAGTGTCTGGTCTCATCTGCTCCGCGACAGCCTCGCTTGCCAA
GGTCTGCCTTCAGGGTTTGAGCATCACTGATGCTTCTCTTGCCGTGATTGGGTACTACGG
AAAGGCGATCACAAACCTCACCCTCACTCGCCTGTCATCGGTCGGCGAGAGGGGTTTTTG
GGTGATGGCAAACGCCCTTGGCCTGCAGAAGCTCAGATGTATGAGCATCACCTCCTGCCC
AGGAGTCACCGAGCTGGCACTTGTTTCCATTGCCAAGTTCTGTCCGAGCTTGAAGCAGCT
TTACCTCAGGAAGTGCAGCCAAATCTCGGATGGTCTTCTCAAGGATTTCGCAGAAGCAGC
CAAGGTTCTGGAGAATTTGCAGATTGAGGAATGCAACAGGGTTACTCTCACGGGCATCCT
TTCTTTCCTCCTGAACTGCAGCCCAAAGTTCAAGGCTCTCTCTTTGGTTAAGTGTACTGG
TATCAAGGACATTTGCTCTGCACCTGCACAGCTCCCCGTTTGCAAATCACTTCGGTCCCT
TACCATCAAGCAGTGCCCCGGATTCACAGACTCGAGCTTGGCCGTGGTTGGCATGATCTG
CCCTCATCTGGAGAATCTTGACCTGAGCGGTCTTGGTGCCGTCACCGACGATGGCCTCCT
TCCATTGATCAGGAGTTCCGAAAGTGGGCTGGTTCATGTCGACTTGAATGGTTGCGAGAA
TCTCACAGATGCAGCTATTTCCGCCCTGGTGAAGGCGCACGGCACTTCTCTTGCACATCT
GAGCCTTGAGGGCTGCAGTAAGATAACTGATGCAAGTCTGTTTGCCATTTCCGAGAGTTG
CTCCGAGCTCGCCGAGCTTGATCTTTCAAACTGCATGGTCAGCGACTATGGTGTTGCGGT
GTTGGCATCCGCGGAGCGGCTCAAGCTCCGTGTCCTCTCACTGTCCGGCTGTCTCAAGGT
CACACCGAAGAGCGTTCCATTCCTGGGAAGCATGCCTGCATCGTTGGAGGGCCTCAATCT
CCAGTTCAACTTCATCGGCAACCACAACATTGCATCACTGGAGAAGCAGCTCTGGTGGTG
CGACATCCTTGCTTAAGAGGATCTCCAGATGCAAATATACGACCGTAGGTAGTACTTCTT
CAGTCAAGCTTCATAGCAGAGTCGGGTTCATCGGTTGCGCGTTTGAGTCATGGTGGGCTT
CCTTTGTCTTAGGGTCGGTTGTTTTCCGGGGGACGCTTTAGCCAAGTGCTCGTTTTTTGC
AGGCCTCCTCTCGCGAGGTTGCCTGTTCCTTGAGCCTTCGGCTGCCATTAGCGTGGCACC
CTGTCCCTCTACCCCCAACCTATGCCCTTGTGATTACAGTCCCTACACCATGCTTCTTTT
TTTCTCTCCTTATCAAGTTCTGTGTGGGAGCTCAAATATTGTCAGTTGTGTCTTCTTTTC
CAGTACAATCTTGTTCCAGAGTTGTGGGACATCAGTACTTCTGGTTTCAATTCCATAGCA
AGTTCTATTTGTCGGTGTGTGCCTGTCGTAGAAGCTTAGCTCTGGTTCTTCGATCCGCCT
CTAGGTGTCTGCTACAACTTCTCTCAGTTTGTCCTTGTTCCAGTTTCAGTCTCTTCACGG
TCTGTAGTGTGTGTGTGTGCGCGGGCGTGTGTGTGCTGTGTGCGTGTGTGTCGGTGGATG
GTTGCTTTTCTGCAGCATCTATAGGGGTTGCCTGATGTCCCTGGGGATCTGGCCTTGGCA
AGGTGCAACATATCAAAGGGCCCTTGCCATGACAACCTTGTGTGGCTGTTTTTTCTGTCC
AGATCCCCGGTTTTTGCAGGCGTGTGGTCCAGTGCTGTAACCTTTACAATCATTCTGGGA
TAAATAAAATTTGTTTCCGTCCAAAAAAAAAAAAAAAAATACATAATCGCAAAAAAAAAA
AAAAAAA

Homology of Contig U35_653 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g40360.1	665	0.0	protein\|OsFBL30 - F-box domain and LRR containing protein, expressed
Brachypodium v1_2	Bradi1g36530.1	643	0.0
Arabidopsis v10	AT2G25490.1	628	3e-157	\| Symbols: EBF1, FBL6 \| EIN3-binding F box protein 1 \| chr2:10848018-10850275 REVERSE LENGTH=628