barSeed - Barley Seed Development Database

Probe CUST_1245_PI390587928

Source Contig U35_28643

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1245_PI390587928	Hv_44K_v2	TTCATCAGCTTCTCCAGCAACGGCACGCTGGAGGAGGTGCTCCTGAACAGGACTGCCAGC	458	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68912.1	2192	7e-23	1340 - 1399	98	59 / 60	plus	ABC12286
JLOC1	JLOC1_45640.1	1969	4e-23	1207 - 1266	98	59 / 60	plus
Harvest21	ABC27625	528	3e-25	459 - 518	100	60 / 60	plus
Harvest35	U35_28643	528	3e-25	459 - 518	100	60 / 60	plus

Contig Sequence (528 bp)

>U35_28643 528 Hv_44K_v2
GCATCGGCATGATGATGCGTAAGCATGGCCTCGCTGTCGACAGGATCGTCGACGCCAAGC
TGGTCAACGCCGATGGGGACCTCCTCGACAGGGCCGGCATGGGGGAGGACCTCTTCTGGG
CCATCCGAGGCGGCGGCGGCGGGAGCTTCGGCGTCGTGCTCTCTTGGAAGGTGCAGCTCG
TGAACGTCCCGCCCACGGTGACGGTGTTCAACATCGGGAAGACGGTCGACCAGGGCGCCG
TGGACATCCTCACCAGATGGCAGGACGTCGCGCCGTCGCTCCCCAGCGACCTCACCATAA
GGGTGATCGTGCAGCAGGGGCAGCAGGCTCTGTTCCAGGGCCAGTACCTCGGCGCGTGCG
GCGCGCTGGTGGAGACGATGGGCGAGCAGTTCCCGGAGCTCGGCATGACGAGCGCCGACT
GCCAGCAGATGACCTGGCTGCAGTCCGCGGCCACGCCCTTCATCAGCTTCTCCAGCAACG
GCACGCTGGAGGAGGTGCTCCTGAACAGGACTGCCAGCCTGAGCACGT

Homology of Contig U35_28643 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g35630.1	529	5e-62	protein\|reticuline oxidase-like protein precursor, putative, expressed
Brachypodium v1_2	Bradi3g35230.1	369	2e-58
Arabidopsis v10	None