barSeed - Barley Seed Development Database

Probe CUST_12431_PI390587928

Source Contig U35_2103

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12431_PI390587928	Hv_44K_v2	TGTGTGCTTGGTTCAGTGATTTTGCTCATCTGAGAATCGAGTCATCTTCTTTCTAAAAAA	1157	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73595.1	3632	3e-21	1116 - 1169	100	54 / 54	minus	ABC05087 ABC20776
JLOC1	JLOC1_49000.1	1683	2e-21	980 - 1033	100	54 / 54	plus
JLOC1	JLOC1_48999.1	1538	2e-21	1001 - 1054	100	54 / 54	minus
Harvest21	ABC05087	1229	3e-25	1158 - 1217	100	60 / 60	plus	ABC05087
Harvest35	U35_2103	1229	3e-25	1158 - 1217	100	60 / 60	plus

Contig Sequence (1229 bp)

>U35_2103 1229 Hv_44K_v2
GGGCGCGACCACGGCGACGCCGATGCCAACGGCTTCGAGGGCGGCTACGGTGGCGGGGGC
GGCGGATATGCGGCGCCTCGGCTGGAGGACGGCGAGGGGAAGCAGGCGGAGAGGGGCCGC
GGCCCGCGCCAGCCCTACCGCGGAGGGGGCGGCCGCCGCGGGGGCTACTCCGATGGGCAG
AACACTGACGAGTTCGGGCGCCCGCACCGGTCCTACGAGCGCCGCAGCGGCACCGGCCGC
GGCTTCGGGATGAAGCGCGACGGCGCTGGCCGTGGCAACTGGGGGACTGCCACCGATGAA
GGGTTCCCGCAGGAAAATGTGGAGGCTGTCAACACTGAGGAGACCCCTGCTGTGGCAGAG
GATGCGAAGACGCCCGAGGATGCGCCGCTGCCTGAGGCTGAGAAGGTCAAGGAGGGTGCA
GAGAATGCAGAGGAAGAGAAGGAAGCTGAGGAAGATAAGGAGATGACCTTGGAGGAATAT
GAGAAAGTATTAGAGGAGAAGCGGAAAGCGATTCTCGCACTGAAGGCTGAGGAGAGAAAA
GTTGAAGTTGACAAGGAGCTGCAGTCCATGCAGCAACTGTCAGTGAAGAAGGATGCTGAG
GAAGTATTTATCAAGCTGGGCTCCGACAAGGAGAAGAAGAAAGACAATGCAGAAAGAGAG
GAGCGTGCCAAGAAGTCCCTCAACATCAACGAATTCCTGAAGCCGGCTGAAGGCGAGAGG
TATAATGGTGGTCGGGGCCGCGGCCGTGGCTTCAGGGGACGTGGCGAGCCCCGTGGCGGG
TACAACGGCGGAGGCGGTGGCAGGCGACCAGCTGCTGCTCCGGCGATCGAAGACCAGTCC
CAGTTTCCGACGCTAGGTGGGAAGTGAAGGGGTCCGTGTCCCGTGCCCTGATCCGACTAG
CAGCGGCTCCTCCGTTCACTCCAGACTGTGTCCTTGTTGAGTTGTTGGTACTCAGTAGTG
TGTTGTCGTTCCGCCCGTCTGTCTTTTTATCTGTCGCCGTGTCTTCGCGCCGTCTGTGTA
TCCCGTGTACACCGGAGGTGCACCCACCCACCTGTCGCCACCCGTGTCGTGTTCTAGCCG
CAGTTCATTCCGTTTATTTCGATAGGACAATGCTATGAGATGTTTTCCTGGTGCACTTAC
TGCTGTCATGTGTCTCCTGTGTGCTTGGTTCAGTGATTTTGCTCATCTGAGAATCGAGTC
ATCTTCTTTCTAAAAAAAAAAAAAAAAAA

Homology of Contig U35_2103 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g51180.1	384	8e-73	protein\|hyaluronan/mRNA binding family domain containing protein, expressed
Brachypodium v1_2	Bradi2g14540.1	382	1e-84
Arabidopsis v10	None