barSeed - Barley Seed Development Database

Probe CUST_12420_PI390587928

Source Contig U35_2114

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12420_PI390587928	Hv_44K_v2	ACGAATATTGTGTACATATGGTGCATCTGCTGGCTGTGACGATCTAGTGGGTTCCATTGA	931	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371709	2621	6e-24	2558 - 2616	100	59 / 59	plus	ABC12450
MLOC	MLOC_68460.2	1961	6e-24	22 - 80	100	59 / 59	minus	ABC12450
MLOC	MLOC_68460.1	3035	6e-24	71 - 129	100	59 / 59	minus	ABC12425 ABC12450
JLOC1	JLOC1_45296.3	2552	3e-24	2432 - 2490	100	59 / 59	plus
JLOC1	JLOC1_45296.2	3503	3e-24	3383 - 3441	100	59 / 59	plus
JLOC1	JLOC1_45296.1	2576	3e-24	2456 - 2514	100	59 / 59	plus
Harvest21	ABC12450	797	6e-22	9 - 69	97	59 / 61	minus	ABC12450
Harvest35	U35_2114	1191	3e-25	932 - 991	100	60 / 60	plus

Contig Sequence (1191 bp)

>U35_2114 1191 Hv_44K_v2
ATGATATACATATCCTGCTTTGTGAAGACATCACACTTTGAAGAGTATCTAAACGTCCAG
TTGGGCACCACAGGGCAAGGCTTGCTACACAGATTCGAACAGTTCAGAAATCATATGGCA
ATGCAGACATTGACAACATTCCTTTTGGAGAGGATACATATAGTCCTCGTGCACGTGGCC
GTCCGCTCCTGATCGATACTTCTGCAAGGATCAGCGATGACAAGAAACCTCCTCGACCAG
CAGTAGCACGTGAAGATCAGAAAGCAAAGGTGGCAAGTGTATCATCAGCAGAGACGAAGT
CAGATGCACCTGATGGTTCTTCTAGTTTAAACAACTCCGAGAAGCAGGAGGAGAAAAAGT
TGGTTCCAGACGACGCTGGGTTGAAGAAGGATCATGTGAAAACAACAATACCATCTCCCA
CAACTCCGTGGGCAGATCCCGTTGCATCTACTACTTCCAAGGCAGATGAAGGGAAGGCTC
AAGGATCAGAAGGACAACAAGGAGATGGTTCTTCAGTTGCTACACCAAAGAAGGAATCTA
GTAGGCCTGCCTTTGAAGACAACATTGTCCTTGGTGTCGCTCTGGACGGCTCGAAGAGGA
CACTCCCAATTGACGAAGGGATGAACCCTCATCTATCGCTATCTGAACCTGAGCAAGACA
CTGGTTCGTCGTTGCCCAAGAAGAAAGGTCAAAGCTACTCACTTTCAGGCCAAGACAAGG
CTGACTAGAGGAAGGTGATGGATCCATGTCGTCTGATCTTTACGGATTAATGATTTGTCA
CCAAGCCGACCTTTTTTGTGCGCTTGTGCAAATGCAATCAGTCACTCATTCATACAGCTA
GCTCTTTTTTTTTTCTATGTTCGAGGCATGAATATACTTGTTGAAATGTACCTTAGGCGT
CGATCGCTGTCAGACTTGTAAAGGTCGCAAGACGAATATTGTGTACATATGGTGCATCTG
CTGGCTGTGACGATCTAGTGGGTTCCATTGAGCGGCCGCTGGCCCTTCGACGCCGCGAGC
CTTCCTTCTTCTCCCCGCCTGACGCTTCCCTTTCATGGTACGGATTTGATGAAAAGAATA
ATGAGTTTGATGGGCAAAACTCAGAGCTGTTTCTGGAACTTTTATTTTGTTTGAAATGTG
GAGTATGTGGATGATGTAATGTGGAATCCCTTGCCATTTACTCAGTTTGTT

Homology of Contig U35_2114 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g31839.1	1838	4e-70	protein\|transposon protein, putative, unclassified, expressed
Brachypodium v1_2	Bradi1g15920.1	674	9e-87
Arabidopsis v10	None