barSeed - Barley Seed Development Database

Probe CUST_12416_PI390587928

Source Contig U35_2118

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12416_PI390587928	Hv_44K_v2	CGACCAATTAGTCTAACTATTGAAGTCCTTGGGGAAGTATGAATATGAATAAAGAGGAAA	1490	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370305	1553	2e-24	1467 - 1526	100	60 / 60	plus	ABC05353 ABC05354
MLOC	MLOC_12419.2	1138	2e-24	631 - 690	100	60 / 60	minus	ABC05353 ABC05354 ABC09489
MLOC	MLOC_12419.3	1034	2e-24	570 - 629	100	60 / 60	minus	ABC05353 ABC05354 ABC09489
MLOC	MLOC_12419.1	1969	2e-24	1462 - 1521	100	60 / 60	minus	ABC05353 ABC05354 ABC09489 ABC12595
JLOC1	JLOC1_8329.2	2605	8e-25	1390 - 1449	100	60 / 60	plus
JLOC1	JLOC1_8329.1	2836	8e-25	1621 - 1680	100	60 / 60	plus
JLOC1	JLOC1_8328.1	1910	8e-25	915 - 974	100	60 / 60	minus
Harvest21	ABC05354	1520	3e-25	1457 - 1516	100	60 / 60	plus	ABC05354
Harvest21	ABC05353	421	3e-25	335 - 394	100	60 / 60	plus	ABC05353
Harvest35	U35_2118	1594	3e-25	1491 - 1550	100	60 / 60	plus

Contig Sequence (1594 bp)

>U35_2118 1594 Hv_44K_v2
AGAGAATCCTCTTCGTTTTCTTCCCAAGTCGCCCTCTCCTCCTGGTTCCCGTAGCTTCGC
CGTGCCGCAACGAGGAGACGAGGCCTCGCAGGGGAAGCTCGCCATGATCTCCGCGGAGAG
GAGCCAGTCGCAGAGCCCGCGGTCGCCCGGGGCGGCGGCCGGGGCGCCGTTCCTGTCGAT
CTGCGTCACGGATCCCGTCAAGATGGGCACCGGCGTCCAGTCCTACATCTCCTACCGCGT
CATCACCAAGACTAACCTACCTGAATTCGAGGGAGCAGAGAAAATTGTTATCAGGCGCTA
TAGTGATTTTGAGTGGCTGCACGATCGGCTAGCTGAGAAGTACAAAGGCATTTTTATACC
TCCTCTTCCAGAGAAGAATGCTGTTGAGAAATTCCGGTTTAGCAAAGAATTCATTGAATT
GAGGCGCCAAGCTCTGGACCTATTCATCAACAGACTAGCTTCACACCCGGAACTTAAGCA
AAGCGAAGATTTGAGGACATTTTTGCAGGCAGATGAAGAGAAAATGGATAGAGCAAGGTC
TTATGAGACTGGTATATTTAAGAAGCCCGGAGATTTCATACAAATGTTTAAGGATGTACA
GTCAAAAGTCAGTGATGTTGTTCTGGGAAAAGAAAAGCCAGTGGAAGAGTCTTCTCCTGA
ATATGAGAAGCTTAAACATTACATATTTGAGCTAGAAAATCATCTAGCAGAGGCCCAGAA
ACAAGCATTTCGCCTTGTAAAAAGGCACAGAGAACTTGGGCAATCTTTGGCGGACTTTGG
GAAAGCGATTAAGCTTTTAGGCGCCTGCGAAGGGGATTCGTTGGAGAAGGTGTTTTCCGA
AGTTGGTTCGAAGTCAGAAATGTTGTCAATAAAGCTGCAAAGAGAGGCAGATAACCTTCT
CTTTAATTTTGAAGAACCTTTGAAAGATTATGTGCGTGCTGTGCAGTCAATAAAGGCCAC
TATGCTTGATCGAGCCAATGCTTTCAGGCAGCACTTTGACTTGGACCAGGAGAGGAAGTA
TAAAGAGCTTAACCTTGAAAAAATGAAGTTCATGAACCCTGAGAAGTTTTCCGAGTCAGA
AACTGAGTTCAGTGAGTTGAAAGCAGCCAGTGAGGAGGCTACGAAGAGGTACGAGCACAT
AGTTAGTGTAATGAACGACGAGCTTGCACGATTCCAAGAGCAGAAAACAGCTGATATTGG
ACTTGCATTCCATGAGTTTGCGAAAGGTCAAGCAAAGTTAGCTAAAGACATTGCTGATGC
GTGGCGCAGCGTCCTCCCAAAGCTAGAAGCCTGTTCCGCTTCATAATCGAAACTGTGTTT
ACCCGTTGTGTTGAAATAGTGGTTGGCCCTTTGAGTTTTAGGCTGATTTTTTCCAGCCCA
ATTTGACAGTGGTTCATGTATACTTGAAAAGTGATGGTTGACAATGCTCCGGTTGTTATA
TTGACATCTTTTCTTTACCGTGTGAGTGTGTACTCTGTAACTCAAATTTTCGACCAATTA
GTCTAACTATTGAAGTCCTTGGGGAAGTATGAATATGAATAAAGAGGAAAAATAGTGGAC
AATGGAGTTTAGCTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_2118 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g64280.1	400	protein\|sorting nexin 1, putative, expressed
Brachypodium v1_2	Bradi2g55760.1	403
Arabidopsis v10	AT5G06140.1	402	\| Symbols: SNX1, ATSNX1 \| sorting nexin 1 \| chr5:1856212-1858752 REVERSE LENGTH=402