barSeed - Barley Seed Development Database

Probe CUST_12385_PI390587928

Source Contig U35_35073

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12385_PI390587928	Hv_44K_v2	AAATAATGAAACAGAGCTGAGTACAACGGCGCCAACTTTTGCACACGTGATTTTTGACCG	302	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_45414.1	1106	2e-24	30 - 89	100	60 / 60	minus	ABC16434
JLOC1	JLOC1_29486.2	1345	8e-25	30 - 89	100	60 / 60	minus
JLOC1	JLOC1_29486.1	982	8e-25	31 - 90	100	60 / 60	minus
Harvest35	U35_35073	782	3e-25	303 - 362	100	60 / 60	minus

Contig Sequence (782 bp)

>U35_35073 782 Hv_44K_v2
CCCTTTTCATAATGCTCGAGCGGCCGCTCAGAATCACATGGAGTACGCCGGAAGGAAGGA
TCTTATGTCAATAAAAGCTTGCTAACTCTTGGAACGACTTCACGGGGCAGTCTGGAGCCT
TTTAATCTATGCACGCTGCATTGCTGCCTTTTCATAACCCTAAGTGGCAGCTGGCGCCAT
AGCATTGCGGACATGCAGAAAGCCAGCATAGCCTAAGGTGTGGCACTATTGTAGGGAGCA
GTCAGCTGATGCCTCCCAATAGCAAGCTGCACGGCTTGATCGGATTACTCTGTCACCCCA
TGCGGTCAAAAATCACGTGTGCAAAAGTTGGCGCCGTTGTACTCAGCTCTGTTTCATTAT
TTGTTCTTTGCTGTAGATAATTTAATTGACTGGATTAGCATGTTTTCTCAGCGGCCGCTC
ACAAACGGAGTGAATGGCTCTTCTTAGATGCAGGTATATATAGTCGCCTTGAATGCACCC
ACTAAACGCTCAATAACTTCCAGTAAAGCCTCTCCATCCTCAAGCTCTCCATGAACCAGT
CATCACCAACCTCCTTCCACGTCTCGTGATAATGCCCACCTCCAGTACCATGAATACCAC
CTTGATGTTCCTTCGTCCCAGCATGATACGTAACAGCCCAGATAGCTTTGGTCTCATCAG
GCGCAATCTGCCCCATCTCAGCAGGCCCGAGAATGTGAATCGTCTGCATCGTCTTNGACT
CATTCTCGAAGAAAGCCACCCAGTCCTTCGTCGAAGACCACGAGTACTCAATGTCTCCCT
TG

Homology of Contig U35_35073 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None