barSeed - Barley Seed Development Database

Probe CUST_12378_PI390587928

Source Contig U35_9901

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12378_PI390587928	Hv_44K_v2	ACGCACCTCAGTAATCCTTCTGTGGCGACTACAGACACAAGCTGTGAGTCTGTTGTTACT	737	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364215	3141	2e-24	721 - 780	100	60 / 60	plus	ABC13590 ABC18488
MLOC	MLOC_33978.4	1779	2e-24	1321 - 1380	100	60 / 60	minus	None
MLOC	MLOC_33978.2	2836	2e-24	2401 - 2460	100	60 / 60	minus	ABC13590 ABC18488
MLOC	MLOC_33978.1	2816	2e-24	2367 - 2426	100	60 / 60	minus	ABC13590 ABC18488
JLOC1	JLOC1_21944.1	2827	8e-25	394 - 453	100	60 / 60	plus
Harvest21	ABC49230	428	3e-25	369 - 428	100	60 / 60	plus
Harvest35	U35_9901	797	3e-25	738 - 797	100	60 / 60	plus

Contig Sequence (797 bp)

>U35_9901 797 Hv_44K_v2
TCGAGCACTGTTGGCCTATTGGCTCTTCCTCCTCTGCGCCCTGCCTCTGCCTCTGCTCCA
CTATTAAACCAAACCCCACCTCCCCCCTCCCCGCCTTTCCCTTCCCTTCCATCCGCGCTC
TCCTCCACCCCACCTCGCCGGCAGCCCCCCACACCCCACCACCACCGCCACCACCACGGC
CATGGAGTCCACGGGAGGCGGCGCGCGGAGGGCATGACGCGGCGGCGACCCTGGCCCTGG
CTCATCCTCTCTTTACTGCCACTACTACTCACTCGGTTGGCGGCGGTCGTCCCGGTAGCC
GGCGGCTCGAGATGGCGGGGGCGATGGTGGTGCACGGCGGGCACGGCGGGCACGGCGGGG
GCAGGGACCGGGACCGGGACAGGTCGTCGCCCGGCGGCGGCAGCGGCGGGGCGCCGCAGG
TGGACACGGGCAAGTACGTGCGCTACACCCCCGAGCAGGTGGACGCGCTGGAGCGCGTCT
ACAGCGAGTGCCCCAAGCCCAGCTCGCTCCGCCGGCAGCAGCTCATACGCGAGTGCCCCA
TACTCAGCAACATCGAGCCCAAGCAGATCAAGGTCTGGTTCCAGAACCGCAGATGCCGCG
AGAAGCAACGGAAGGAGGCCTCTCGCCTGCAGACTGTGAACCGGAAGCTGTCTGCGATGA
ACAAGCTGCTGATGGAGGAGAACGACAGGCTGCAGAAGCAGGTGTCCCGTCTCGTCTACG
AGAACGGCTACATGCGGACGCACCTCAGTAATCCTTCTGTGGCGACTACAGACACAAGCT
GTGAGTCTGTTGTTACT

Homology of Contig U35_9901 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g43930.2	860	2e-75	protein\|START domain containing protein, expressed
Brachypodium v1_2	Bradi1g13910.1	862	4e-80
Arabidopsis v10	AT1G52150.2	837	1e-65	\| Symbols: ATHB-15, ATHB15, CNA, ICU4 \| Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein \| chr1:19409913-19413961 REVERSE LENGTH=837