barSeed - Barley Seed Development Database

Probe CUST_12372_PI390587928

Source Contig U35_47053

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12372_PI390587928	Hv_44K_v2	TTTGTTATTGTGTTTGTGTTGCCGTAAGATTGATCGGCCTTTTTCCTACCAGGTAAAAAA	11	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38052.1	1142	7e-23	679 - 735	100	57 / 57	minus	ABC00014 ABC00040 ABC00041 ABC00075 ABC00082 ABC00094 ABC00106 ABC00124 ABC00130 ABC00135 ABC00141 ABC00176 ABC00186 ABC00196 ABC00201 ABC00204 ABC00338 ABC00349 ABC00484 ABC00657 ABC00660 ABC00669 ABC00676 ABC00684 ABC00701 ABC32001 ABC47839
Harvest21	ABC47839	612	3e-25	12 - 71	100	60 / 60	minus	ABC47839
Harvest35	U35_47053	612	3e-25	12 - 71	100	60 / 60	minus

Contig Sequence (612 bp)

>U35_47053 612 Hv_44K_v2
TTTTTTTTTTTTTTTTTACCTGGTAGGAAAAAGGCCGATCAATCTTACGGCAACACAAAC
ACAATAACAAAGCAGAACAGAATCACCAAATCGAAGGAGAATGTTAAATCAATTGCTTTT
CAATTTTCAGTCACCTAATTACCAGGGAACAAGATAAACAAAGGACAGCATGGGACGAAT
TTGCATCTGAAGATAACTGAACTTTTCATTGCCATTTCATTTCAGCATCACGACATCAGG
AAAGATCACCAGACAGCAGGCATCATATCAGCGCTACAGAGACACCCAGCACGTTTCCTT
ACTACAACCAGATCGCAAGACACGAACTGCTACAGCGGCGACCGAAAACCTAGGCGCGCT
CCCCTCGGATGCGGCGGGCGAGCTGGATGTCCTTGGGCATGATGGTGACGCGCTTGGCGT
GGATGGCGCAGAGGTTGGTGTCCTCGAAGAGGCCGACGAGGTAGGCCTCGGCGGCCTCCT
GCAGGGCGGAGACAGCGGAGGACTGGAACCTCAGGTCGGTCTTGAAGTCCTGGGCGATCT
CCCTCACCAGGCGCTGGAAGGGGAGCTTGCGAATGAGCAGCTCCGTGCTCTTCTGGTACT
TGCGGATCTCGC

Homology of Contig U35_47053 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g05730.1	137	4e-51	protein\|histone H3, putative, expressed
Brachypodium v1_2	Bradi4g07840.1	137	6e-52
Arabidopsis v10	AT5G65360.1	136	2e-51	Histone superfamily protein \| chr5:26120099-26120509 REVERSE LENGTH=136