barSeed - Barley Seed Development Database

Probe CUST_12368_PI390587928

Source Contig U35_47055

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12368_PI390587928	Hv_44K_v2	CCAAAAATCAGGCTAACGGCAAAGCAGGTTCTTGAGCATACATGGCTTCAAAATGCCAAG	558	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354090	1407	2e-24	172 - 231	100	60 / 60	plus	ABC15997 ABC23641
Harvest21	ABC47844	623	3e-25	559 - 618	100	60 / 60	plus
Harvest35	U35_47055	623	3e-25	559 - 618	100	60 / 60	plus

Contig Sequence (623 bp)

>U35_47055 623 Hv_44K_v2
CGGAGCGCCAGCATCGTCACGCTGCGGGAGGCCTGCGAGGACGACGGCGCCGTGCACCTC
GTCATGGAGCTCTGCGAGGGCGGGGAGCTCTTCGACCGCATCGTCGCGCGGGGCCATTAC
ACGGAGCGCGCCGCAGCCGCCGTCACGCGCACCATCGTCGAGGTCGTGCAGCTCTGCCAC
CACCACGGCGTCATCCACCGCGACCTCAAGCCCGAGAACTTCCTCTTCGCCAACAAGAAG
GAGAACTCCCCGCTCAAGGCCATCGACTTCGGCCTCTCCATCTTCTTCAAGCCCGGTGAG
AAGTTCTCCGAAATTGTGGGAAGTCCCTACTATATGGCCCCTGAAGTCCTGAAGAGAAAC
TATGGACCTGAAATAGACATTTGGAGTGCTGGTGTTATCTTGTATATATTGTTATGCGGT
GTTCCTCCATTTTGGGCTGAGACTGAACAAGGAGTGGCACAAGCTATCCTTCGTGGAAAT
ATTGATTTTAAGAGAGAACCCTGGCCCCATGTTTCTGATAATGCTAAAGATCTAGTTCGA
CAGATGCTTCAGCCTGACCCAAAAATCAGGCTAACGGCAAAGCAGGTTCTTGAGCATACA
TGGCTTCAAAATGCCAAGAAAGC

Homology of Contig U35_47055 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g39090.1	548	2e-144	protein\|CAMK_CAMK_like.29 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Brachypodium v1_2	Bradi2g22750.1	549	5e-145
Arabidopsis v10	AT3G51850.1	528	2e-135	\| Symbols: CPK13 \| calcium-dependent protein kinase 13 \| chr3:19232667-19235526 FORWARD LENGTH=528