- Probe CUST_12315_PI390587928
- Source Contig U35_9927
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_12315_PI390587928 | Hv_44K_v2 | TAGCAATCCTTATTTTGGCTCATCCTTAAGCCATGCTTCTTGTTCTCCTGAGGCGCATGT | 726 | GeneList: floralwhite MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.294 | 0.691 | 1.913 | 1.640 | 1.502 | 1.032 |
| Raw | 5.781 | 22.210 | 57.490 | 69.994 | 24.467 | 18.828 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK364175 | 3392 | 2e-24 | 1589 - 1648 | 100 | 60 / 60 | plus | ABC03031 ABC22235 |
| MLOC | AK370334 | 2412 | 2e-24 | 606 - 665 | 100 | 60 / 60 | plus | ABC22235 |
| MLOC | MLOC_64767.1 | 3610 | 2e-24 | 1809 - 1868 | 100 | 60 / 60 | minus | ABC22235 |
| MLOC | MLOC_64767.2 | 3163 | 2e-24 | 1809 - 1868 | 100 | 60 / 60 | minus | ABC22235 |
| MLOC | MLOC_64767.3 | 3120 | 2e-24 | 1764 - 1823 | 100 | 60 / 60 | minus | ABC22235 |
| MLOC | MLOC_64767.4 | 3731 | 2e-24 | 1744 - 1803 | 100 | 60 / 60 | minus | ABC22235 |
| JLOC1 | JLOC1_42558.4 | 3213 | 8e-25 | 1315 - 1374 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42558.3 | 3052 | 8e-25 | 1154 - 1213 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42558.2 | 3219 | 8e-25 | 1321 - 1380 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42558.1 | 3578 | 8e-25 | 1680 - 1739 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC19590 | 785 | 1e-24 | 727 - 785 | 100 | 59 / 59 | plus | |
| Harvest35 | U35_9927 | 786 | 3e-25 | 727 - 786 | 100 | 60 / 60 | plus |
Contig Sequence (786 bp)
>U35_9927 786 Hv_44K_v2 TTGAGCATTGGGTCTTACAGAGAGGGAGGCCACCTGAAGATCATGACCAGAAAAGAATGG ATCTCGTTCGGCAGAAGTTTGTCGAAGCAAAGCAGCTGGCATCACATGAGAATCTTCTCC AATCGAAAGAATTCCATGATGCTCTGGAGACTTTGAATTCAACAGGGACTTGTTTCTCAA GTTTCTCGAGGAACCCAACTCGCTCTTTGCAAAGCAATCTGGTGAATTCCATTCTGCGCC AACATCACCACAGAGGAAGCAAATAACCGTGTTGAAGCCTGCCAAATCGGTGGAGCTGAA GAGCGAGAATGCACTTAAAAGGCAGCAAAACCATGCAGTTCATGGGAGTAGAACAGAGAA AAGCAATCTTCATAGGAAGCCCAATGCTGGTCATGCCAAAGCAGAAAGGTGTCCACAGCA CACCCGGATAGTGGTCTTAAAACCTACCTCCGCAATCACCTCAGCAGAGCAGTTTCAACA AAATGGTCATGGTAACTCTGATGATTCTGATACTCCTGTTGTATCAAGGCATGTAAGTGA TGAGATACACTGGTCAGCACACGGCATGTGTCACCAGCATGATGAGACGCAGGGTAGCAT ACAGTCAAATATGGTCGGGCGAGATAGATCATATTATGATCGCGCTGAAGAAGGACGCAG TAGCTTCAGTGGCTCGGAGCTTGGAAGTCCAACATCCTGCCATTCATGGGATTACATCTA CCGGTTTAGCAATCCTTATTTTGGCTCATCCTTAAGCCATGCTTCTTGTTCTCCTGAGGC GCATGT
Homology of Contig U35_9927 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g04990.1 | 902 | 4e-99 | protein|expressed protein |
| Brachypodium v1_2 | Bradi1g75500.2 | 688 | 2e-110 | |
| Arabidopsis v10 | None |