barSeed - Barley Seed Development Database

Probe CUST_12313_PI390587928

Source Contig U35_9928

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12313_PI390587928	Hv_44K_v2	ATTTTATCTTGCCTCTCACAAGGTATATGGAGGGGAAGCTAGGATCTCTAGCTTGCGCAA	1174	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44757.1	3468	2e-24	2137 - 2196	100	60 / 60	minus	ABC02300 ABC24776 ABC46979 ABC53005
MLOC	MLOC_44757.2	3398	2e-24	2137 - 2196	100	60 / 60	minus	ABC02300 ABC24776 ABC46979 ABC53005
JLOC1	JLOC1_29028.1	3255	8e-25	1203 - 1262	100	60 / 60	plus
Harvest21	ABC19142	1246	3e-25	1175 - 1234	100	60 / 60	plus
Harvest35	U35_9928	1246	3e-25	1175 - 1234	100	60 / 60	plus

Contig Sequence (1246 bp)

>U35_9928 1246 Hv_44K_v2
AGTCAGGTCAGTCGTCCATTGTAGGATTTTCTTCCACCTGGTCTTCGCACCTCTGAGACG
GGGAGATGCGGAGGCCGTCGGCTTCGTCGCCTCCGGCGAGGGGACCGGCGTTGGCTGCAG
CAGCCGCTGTCGTTCTCCTCCCGGCTATTTTCCCCGCGCTGTTCTCCCCGCTCGGCCGCG
CCTTCCCTTCCCTATTCTCGGAGTGGAATGCCCCTAAGCCAATGCACGAGTCTCTTTTCA
ATGAGTCTTTGCGATGGACAATACCAGATGAACAAAAAAGAGATCTCTGGACACCCTTGC
CTGATCAGGGGTGGAAACCATGCATAAGGTCATCGATCACTCGTGGGTTACCTTCACAAC
CCAGTGGGTACATACAAGTATTTCTTGATGGTGGCCTGAACCAGCAGAGAATGGGGATAT
GTGATGCAGTTGCGGTTGCTAAGATTTTGAACGCTACTCTTGTGATCCCACATCTTGAAG
TAAACCCTGTTTGGAAAGACTCAAGCTCATTTGGAGATATTTTTAATGTGGATCACTTCA
TCAACACCCTAAGAGGCGATGTTTCAATAGTGAGAGCTCCATTAAAAGAATTTTCGTGGA
GCACAAGAGAGTTCTATAGCACAGGAATACGTGCTACAAGAATAAAAACTGCACCTCTTC
ATGCCTCGGCTAATTGGTATATAGAGAATGTCAGTCCTATCCTGCAAAGCTATGGCATTG
CTGCCATTGCCCCCTTTTCTCACCGCCTTGCATTCGATGATTTGCCTGTGGATATTCAAC
GCCTGCGCTGTAAAGTTAACTTTGAAGCCCTGGTTTTTGTGCCTTACATTATATCACTGG
GGAGGACCCTTGAGAAGCGCTTGAGATCTCCAGTGCAGGGGCATTCCACTGAATTAACCC
AACAAGTTGTAGAAGATTACACAGATCAGTCTGAAAAGTATGCAGTTGTACATCTCCGCT
TCGATAAGGATATGGCTGCACATTCTGCCTGTGACTTTGGCGGTGGTAGAGCTGAAAAAT
TAGCTCTGGCTAAGTACAGGCAAGTTATCTGGCAAGGGAGGGTATTAAATTCACAGTTAA
GTGATGAGGAGCTTCGAAACACAGGACGCTGCCCGTTGACTCCAGAAGAGATTGGATTGA
TACTAGTAGCGCTTGGCTTTGACAGCAAAACTCGATTTTATCTTGCCTCTCACAAGGTAT
ATGGAGGGGAAGCTAGGATCTCTAGCTTGCGCAAGCTTTTCCCGCT

Homology of Contig U35_9928 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g24570.1	513	0.0	protein\|growth regulator related protein, putative, expressed
Brachypodium v1_2	Bradi4g30070.1	513	0.0
Arabidopsis v10	AT4G24530.1	519	3e-178	O-fucosyltransferase family protein \| chr4:12667424-12669713 REVERSE LENGTH=519