barSeed - Barley Seed Development Database

Probe CUST_12292_PI390587928

Source Contig U35_47089

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12292_PI390587928	Hv_44K_v2	CATTGGGCATTGGAATTAGGAATTTCTGTATAATTTTAGTTCTGGATGTGTCCAATGCAA	429	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_41293.1	908	2e-24	247 - 306	100	60 / 60	minus	ABC08690 ABC49709
MLOC	MLOC_41293.2	787	2e-24	242 - 301	100	60 / 60	minus	ABC08690 ABC49709
JLOC1	JLOC1_26925.1	905	8e-25	247 - 306	100	60 / 60	minus
Harvest35	U35_47089	711	3e-25	430 - 489	100	60 / 60	minus

Contig Sequence (711 bp)

>U35_47089 711 Hv_44K_v2
TTTTTTTTTTTTTTTTTAACAGCAAAAAAGCAATCTTTTACATAATATAACACATATAAA
TGTGATCAACATTAAGTTTACAATCAGATAAAAAGCTCTACAAGTGTATAGTAATGAAGC
ATCACATGGGCTTCATTACTCCCAGAACTAGATCCACTCAACTATGCTTCTTCTTCTTTG
TCCTGATGCTTGTGAAGAAACATGAAAGGATAGCATCGGCACGTTATACAACAAAATGGT
TAGGAACAAAATAAAAATAATCTAACAGCGTATTTAACAGTAAATAACAAATAATGCAAT
AAATTGGTACAAAGCAAGGTACAATGCATAGGCGAGAGCAACAATAAATTGGTACTAAAT
CCAGAAATCACCATCGGAAATAAAGTTAATAGGACATTTTAGAATCAATTTGTCAGCTCA
CAGTAATGTTTGCATTGGACACATCCAGAACTAAAATTATACAGAAATTCCTAATTCCAA
TGCCCAATGCCCGAAATGTAAGATGTTGGTTCTGGAAAAAAAAACTTGCAACCAGATTTA
AAACAGAACAGCAAGGTGCTGCTATGACCAAATCCTAACCAGAATGCATTTAATAAAATG
GATTGCTTCTGGCTGTTGTAGTAGAATGCATTTAACCAGATTTAATGCATTTAATATATA
TGCATGCTCACGACATGTAGGTTTCATCAGGTCATGATAAAGTACTCCAAA

Homology of Contig U35_47089 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None