barSeed - Barley Seed Development Database

Probe CUST_12272_PI390587928

Source Contig U35_3891

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12272_PI390587928	Hv_44K_v2	GGAAGAAACCTTCAATTTGTATCTTGACATGCCTATAACTTGATGAGGTACTTACGTAAA	1421	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.185	1.750	1.201	0.908	0.445	0.561
Raw	82.063	188.850	112.969	134.116	22.592	31.241

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_39486.1	1835	3e-24	1635 - 1693	100	59 / 59	plus
Harvest21	ABC11741	1467	3e-25	1394 - 1453	100	60 / 60	plus	ABC11741
Harvest35	U35_3891	1495	3e-25	1422 - 1481	100	60 / 60	plus

Contig Sequence (1495 bp)

>U35_3891 1495 Hv_44K_v2
ACCGCCAGGCGGGACAGCAGACGCGAATCGCATTCGCTACCTTGCTTCCTGCTGACGTGC
CTTGGCCTCCCCGCTTCCCACTCCGCTCCGCTGCCACCGACGACAGGAGCGAGCAGAGGA
CGCGATGCAGCAGCAGCAGCAGCAGCTGCAGGCGCCGCCCTCGTGGGTGGCCGGGTCCGA
CGCCGCCCGCCCTGCTCCCGCCACCTTCGACGAGGCGTCCATGGAGCGGAGCAAGAGCTT
CGTCAAGGCGCTCCAGGAGCTCAAGAACCTGCGCCCGCAGCTCTACTCCGCCGCGGAGTA
CTGCGAGAAGTCGTACCTCCACAGCGAGCAGAAGCATATCGTGCTGGACAACTTGAAGGA
TTATGCTGTCAGGGCCCTGGTTAACGCGGTCGACCACCTTGGCACAGTTGCCTACAAATT
GACGGACCTGTATGAACAACAGGTTTCAGAGGTCTCAACTGTTGAGCTGAAAGTAGCATC
CTTGAACCAGCAAGTCCTGACTTGCCAAACTTACACCGATAAAGAAGGCCTTAGGCAGCA
GCAGATGATTGGAAACGCTACAAGACACCACAAACATTACATCGTACCAACTGCGGGAAA
CAAAAGAATGCAAGCCTTTTCTGAGATGCAAACAGACGCCGAGTTTGACTTAAAGCCTAA
ACCTTATCCCTCAGAGAAGACTCTTTTCTGGCACTTGGCTTCAGAGAAGAACACCAAAAC
CAATGGAGAACACCAATCTGAATTGGGCCACGGGGAAACGAAAACTACTAAGCCTACATC
CAGTGGTGGGTTCAACCTTACAGGTAAGGAATTGTCTGTGTCTCCCTTGCCCAAGCGTCT
GCAGTCGAATGTGAGCAGCTCAGACATTGTTACGCGTAACATTGGCATGAAGGATCAGCC
TGGTGCAAGGCATTTGGCATCATTCAGTTCTCTCGACAACCCAAGAGGGCGTCAAATCCA
AAAGGCTCCAGTCCGCACCAAAAGTATGCTAGCTGCTTTCTTTGTCAGGCACAGGTCCGG
AAAGATGAAAAACGTCTCCGTTCGTTGATCAACTACAAACCTGCAGTTTGCTCAAGCCCG
CCCCACCATGAAGTACATGCAACAAACTCAGTCCACATCTCTTATATGCGCATCTTGTAT
GTTAGTGGTCTAGAGATAGACCTTATTTTGATGCCCTTTTCATCTCTAAATTGATGACAA
AATTATATGGATATAGTCAGTCTTAAACCACCGTGGAAGTTTTCAGTATAAATGAATGAG
ATGGAATGCATATGGGTATGTCAATGCTAAGTTCCTTTCATTTATATATAGATCATAAAG
CGTATCTGTAAAGAAAACAACAGAAGATTTGTATGTCCATGAATGTATGTTCATAGTGTT
TTTTTCTGAAAAACTATTGCCACTGGGTGATACGGGTGGAAGGAAGAAACCTTCAATTTG
TATCTTGACATGCCTATAACTTGATGAGGTACTTACGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_3891 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g43420.1	307	1e-161	protein\|expressed protein
Brachypodium v1_2	Bradi2g43930.1	307	2e-179
Arabidopsis v10	AT2G46225.2	329	4e-77	\| Symbols: ABIL1 \| ABI-1-like 1 \| chr2:18982113-18984074 FORWARD LENGTH=329