barSeed - Barley Seed Development Database

Probe CUST_12248_PI390587928

Source Contig U35_20917

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12248_PI390587928	Hv_44K_v2	CGCCGAGCTCCGCGCCCACGCCGACAAGTCCATCGTCGTCGCGCTCGTCGGCAACAAGGC	488	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54996.1	3169	2e-24	726 - 785	100	60 / 60	plus	ABC10091 ABC10092 ABC21364
JLOC1	JLOC1_35446.1	2900	8e-25	2296 - 2355	100	60 / 60	minus
Harvest21	ABC14293	548	3e-25	489 - 548	100	60 / 60	plus
Harvest35	U35_20917	548	3e-25	489 - 548	100	60 / 60	plus

Contig Sequence (548 bp)

>U35_20917 548 Hv_44K_v2
GCAAGGCCGCCATGGTCGCGGACGTCATGGCCGAGTTCGCCGCCCTCTGCGACCACCTGC
TCGCCCCGCCGCCGCCGTCCTCGACCTCGACCAGGAGCAAGCGCGCCCACGGCCCCGCCC
ACTACGACTAGCGCTTGACGCGCCTTGCGTTCGGACCGATCGCCGGAGGCAGACGGCAGA
GCGATGGAGGAGCCGGACTACGTGTTCAAGGTGGTGGTGATCGGCGACTCGGGGGTGGGC
AAGACGCAGCTGCTGGGGCGCTTCACGCGGGGCGACTTCTGCCTCGACTCCAAGTCCACC
ATCGGCATCGAGTTCCAGACGCGCACCGTCGACATCGCCCGCCGCCGCGTCAAGGCCCAG
ATATGGGACACCGCCGGCCAGGAGCGCTACCGTGCCGTCACCAGCGCCTACTACCGTGGC
GCGCTGGGCGCCATGCTCGTCTACGACGTCACCCGCCGGGACTCCTTCGGGCACGCCGCG
CGCTGGGTCGCCGAGCTCCGCGCCCACGCCGACAAGTCCATCGTCGTCGCGCTCGTCGGC
AACAAGGC

Homology of Contig U35_20917 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g50060.1	226	1e-64	protein\|ras-related protein, putative, expressed
Brachypodium v1_2	Bradi1g35120.1	226	5e-71
Arabidopsis v10	AT1G01200.1	237	2e-60	\| Symbols: ATRABA3, ATRAB-A3, RABA3 \| RAB GTPase homolog A3 \| chr1:86715-88145 REVERSE LENGTH=237