barSeed - Barley Seed Development Database

Probe CUST_12247_PI390587928

Source Contig U35_20918

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12247_PI390587928	Hv_44K_v2	TGAGCTAGCTCCTAGATTGTGTCTGATACCGGCCGCCGTATACAGGTGCAGCTTGCGTTC	2	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54996.1	3169	2e-24	330 - 389	100	60 / 60	plus	ABC10091 ABC10092 ABC21364
JLOC1	JLOC1_35446.1	2900	8e-25	2692 - 2751	100	60 / 60	minus
Harvest21	ABC14294	439	1e-24	1 - 59	100	59 / 59	plus
Harvest35	U35_20918	443	3e-25	3 - 62	100	60 / 60	plus

Contig Sequence (443 bp)

>U35_20918 443 Hv_44K_v2
CATGAGCTAGCTCCTAGATTGTGTCTGATACCGGCCGCCGTATACAGGTGCAGCTTGCGT
TCGGACCGATCGCCGGAGGCAGACGGCAGAGCGATGGAGGAGCCGGACTACGTGTTCAAG
GTGGTGGTGATCGGCGACTCGGGGGTGGGCAAGACGCAGCTGCTGGGGCGCTTCACGCGG
GGCGACTTCTGCCTCGACTCCAAGTCCACCATCGGCATCGAGTTCCAGACGCGCACCGTC
GACATCGCCCGCCGCCGCGTCAAGGCCCAGATATGGGACACCGCCGGCCAGGAGCGCTAC
CGTGCCGTCACCAGCGCCTACTACCGTGGCGCGCTGGGCGCCATGCTCGTCTACGACGTC
ACCCGCCGGGACTCCTTCGGGCACGCCGCGCGCTGGGTCGCCGAGCTCCGCGCCCACGCC
GACAAGTCCATCGTCGTCGCGCT

Homology of Contig U35_20918 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g50060.1	226	8e-62	protein\|ras-related protein, putative, expressed
Brachypodium v1_2	Bradi1g35120.1	226	5e-68
Arabidopsis v10	AT1G01200.1	237	2e-57	\| Symbols: ATRABA3, ATRAB-A3, RABA3 \| RAB GTPase homolog A3 \| chr1:86715-88145 REVERSE LENGTH=237