- Probe CUST_12166_PI390587928
- Source Contig U35_47186
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_12166_PI390587928 | Hv_44K_v2 | AACTAGTTTTGATTGTAAACCTGATGCTAACCATGTTTGATTGAAATGTGCCAAGTTTGG | 378 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK252167.1 | 568 | 2e-24 | 434 - 493 | 100 | 60 / 60 | plus | ABC06045 ABC06046 ABC06047 ABC07418 ABC49812 |
| MLOC | MLOC_73669.1 | 203 | 7e-23 | 83 - 142 | 98 | 59 / 60 | plus | ABC06045 ABC06046 ABC06047 |
| MLOC | MLOC_72785.4 | 2627 | 7e-23 | 2563 - 2622 | 98 | 59 / 60 | plus | ABC06045 ABC06046 ABC06047 ABC07418 ABC49812 |
| MLOC | MLOC_72785.1 | 599 | 7e-23 | 538 - 597 | 98 | 59 / 60 | plus | ABC06045 ABC06046 ABC06047 ABC07418 ABC49812 |
| MLOC | MLOC_72785.2 | 602 | 7e-23 | 541 - 600 | 98 | 59 / 60 | plus | ABC06045 ABC06046 ABC06047 ABC07418 ABC49812 |
| MLOC | MLOC_72785.3 | 564 | 7e-23 | 503 - 562 | 98 | 59 / 60 | plus | ABC06045 ABC06046 ABC06047 ABC07418 ABC49812 |
| MLOC | AK354907 | 2073 | 3e-21 | 1993 - 2052 | 97 | 58 / 60 | plus | ABC06045 ABC06046 ABC49812 |
| JLOC1 | JLOC1_48433.5 | 3021 | 4e-23 | 2953 - 3012 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_48433.4 | 2621 | 4e-23 | 2553 - 2612 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_48433.3 | 597 | 4e-23 | 529 - 588 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_48433.2 | 600 | 4e-23 | 532 - 591 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_48433.1 | 562 | 4e-23 | 494 - 553 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC48020 | 459 | 3e-25 | 379 - 438 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC06046 | 465 | 3e-25 | 349 - 408 | 100 | 60 / 60 | plus | ABC06046 |
| Harvest21 | ABC06044 | 523 | 3e-25 | 381 - 440 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC06045 | 1447 | 2e-22 | 1305 - 1362 | 98 | 57 / 58 | plus | ABC06045 |
| Harvest21 | ABC06048 | 344 | 6e-22 | 228 - 287 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_47186 | 459 | 3e-25 | 379 - 438 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_16586 | 465 | 3e-25 | 349 - 408 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_16584 | 523 | 3e-25 | 381 - 440 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_16585 | 1447 | 2e-22 | 1305 - 1362 | 98 | 57 / 58 | plus | |
| Harvest35 | U35_49064 | 351 | 6e-22 | 81 - 140 | 97 | 58 / 60 | minus | |
| Harvest35 | U35_16587 | 720 | 6e-22 | 582 - 641 | 97 | 58 / 60 | plus |
Contig Sequence (459 bp)
>U35_47186 459 Hv_44K_v2 GTCGTCTCCCACCACGATTCCCACTGCCGCTGACCTCGTCTCCCACCCACGATTCCAACA CCCTCACCCCTCACCCGGAGAAGCCAAGGCCGGCGGCGAGGAAGAAGGAGAAGAAAGCAT CACCATGGTGGTCCGGATCCGGCTCACGCGGTTCGGCTGCCGCAACCGGCCCTTCTACCG GGTGATGGCTGCCGACAGCCGCTGGCTGCGCGACGGCAAGCACCTCGAGGTCCTGGGCTA CTACAACCCGCTCCCCGATGTTGGCCTTCATTCATGTTTCGTCGCAAGGTCCAGGAAGAA GAAGTCAGGAGAAGCACAAAGTTCTTGATCATTGGAGCTAGTTATTGTTTTGATTTTTTA GTTGTGTTACCTAATGTGAACTAGTTTTGATTGTAAACCTGATGCTAACCATGTTTGATT GAAATGTGCCAAGTTTGGNTNNAAAAAAAAAAAAAAAAA
Homology of Contig U35_47186 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |