barSeed - Barley Seed Development Database

Probe CUST_12137_PI390587928

Source Contig U35_6119

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12137_PI390587928	Hv_44K_v2	CGACGAAGACGAAAGCAATGGAGCGAAACCTTTTCTCATGTTTATTTTTTCGATTTTTTA	1647	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357589	1944	3e-22	1825 - 1884	98	59 / 60	plus	ABC16001 ABC16221
MLOC	MLOC_65544.2	2927	3e-22	1891 - 1950	98	59 / 60	plus	ABC16001 ABC16221
MLOC	MLOC_65544.1	2099	3e-22	1720 - 1779	98	59 / 60	plus	ABC16001 ABC16221
MLOC	MLOC_65544.3	2363	3e-22	1327 - 1386	98	59 / 60	plus	ABC16001
JLOC1	JLOC1_43133.1	2841	1e-22	1891 - 1950	98	59 / 60	plus
Harvest21	ABC16001	1035	3e-25	959 - 1018	100	60 / 60	plus	ABC16001
Harvest35	U35_6119	1724	3e-25	1648 - 1707	100	60 / 60	plus
Harvest35	U35_8737	667	5e-23	61 - 120	98	59 / 60	minus

Contig Sequence (1724 bp)

>U35_6119 1724 Hv_44K_v2
GGTTTCTTCGTTGATTGGTTGGCTTGCCGCCGCGGGCGGGCAGCACGACGACGGCGGGAG
GTTTCAGCAAGAAGATGCGGGCGCTGGAGGACGACCTGTTCCCGTCCACCCCTGGCAAGG
TGAAGATCGAGCGGGCCGGCGGCGCCATGAACCGCCAGCTGCACCGTTGCTTCGCGTCCA
CCAGCACCATGTTCCTCTGGGCGCTCTTCCTCGTCGCCATGACCGCCTCCTACCTCAGCT
TCCAGTCCTTCGTCGACACCTCCTCCAAGTACTTCGCCGCCTCCTGGGGCGGCCTGCACT
GGGAGCGCCAGATCCGCGCCTCCGCCGCGCCGCGCAGGCCGCCGGGGTCGGCCGCCGGGG
CGGGGATGTCGGTGCTCGTCACGGGCGCCTCCGGGTTCGTCGGCGCGCACTGCTCCCTCG
CGCTGCGCAAGCGTGGGGACGGCGTCGTCGGCATCGACAACTTCAACGCCTACTACGACC
CCTCGCTCAAGAAGGCACGCAAGGCGCTGCTGTCCTCCCACGGCGTGTTCGTCGTCGAGG
GCGACATCAACGACGGCCGGCTCCTGGCCAAGCTCTTCGACGTCGTCCCCTTCACCCACG
TGCTCCACCTGGCCGCGCAGGCCGGCGTGCGCTACGCCATGGAGAACCCGGCCTCGTACG
TACACTCCAATGTTGCGGGGCTCGTCACCCTCCTGGAGGCCTGCAAGAACGCCGACCCGC
AGCCGGCCATCGTCTGGGCGTCATCCTCCTCCGTCTACGGCCTCAACGACAAGGTGCCCT
TCTCCGAGTCGCACCGCACGGACCAGCCGGCGTCGCTCTACGCGGCCACGAAGAAGGCCG
GCGAGGAGATCACCCACTCGTACAACCACATCTACGGGCTGTCCATCACCGGCCTGCGCT
TCTTCACGGTGTACGGGCCGTGGGGGCGGCCGGACATGGCCTACTTCTCCTTCACCCGCA
ACATCCTGCAGGGGAAGCCCATCACCGTCTACCGGGGCAAGAATCACGTGGACCTCGCCC
GCGACTTCACCTACATCGACGACATCGTCAAGGGCTGCCTGGGGTCGCTGGACACGGCCG
GCAGGAGCACGGGCACCGGCGGCAAGAAGCGCGGGCCGGCGCCCTACAGGATCTTCAACC
TCGGCAACACCTCCCCTGTGACGGTGCCCACGCTGGTGTCCATCCTGGAGAAGCACCTCC
GGGTGAAGGCGAAGAAGCACGTGGTGGAGATGCCCGGCAACGGCGACGTGCCCTTCACCC
ACGCCAACATCTCGCTCGCCCGGCAGCAGCTCGGGTACAAGCCGACCACCAACCTCGACG
CCGGCCTCAAGAAGTTCGTCAAGTGGTACCTCTCCTACTACGGCTACACCCGGGGATCCA
AGAACTTGTGACCGCCGCGCCGCGCCGCGCCGCCCCCCCTATTCTTCCCCTCCTCACCCA
ACCCCTGCTGATTCTTTATTTCCGACCACTCCCGGATCAAACATTTTTAGTCCCATGGAT
GGATGGATCATCGTCAAGCTTTAACAGCATTCTTGTCTCGATTCTTTTTGCGGGAATACT
ACGTTTTAGGGTGGTGTTCTCCGGTGAAGAAAAAAAGAAAAATCCCGGATCGAATTCTTT
CCTTTCCTTGCCGCCGCCGCCGAGCGCCGACGAAGACGAAAGCAATGGAGCGAAACCTTT
TCTCATGTTTATTTTTTCGATTTTTTATACTCTGTAAAGNACAA

Homology of Contig U35_6119 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g54890.1	438	protein\|UDP-glucuronate 4-epimerase, putative, expressed
Brachypodium v1_2	Bradi3g53830.1	442
Arabidopsis v10	AT4G30440.1	429	\| Symbols: GAE1 \| UDP-D-glucuronate 4-epimerase 1 \| chr4:14881976-14883265 REVERSE LENGTH=429