barSeed - Barley Seed Development Database

Probe CUST_12126_PI390587928

Source Contig U35_6130

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12126_PI390587928	Hv_44K_v2	TGAAGCTCTAGGTCAATTCTCCTATCGTGTTGGTGCTGGTAATTTCTGTTTGGTACATGT	626	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367678	2341	2e-24	650 - 709	100	60 / 60	plus	ABC05196 ABC05866 ABC12346 ABC12347
MLOC	MLOC_43777.3	2372	2e-24	661 - 720	100	60 / 60	plus	ABC05196 ABC05866 ABC12346 ABC12347
MLOC	MLOC_43777.1	2571	2e-24	671 - 730	100	60 / 60	plus	ABC05196 ABC05866 ABC12346 ABC12347
MLOC	MLOC_43777.5	2020	2e-24	644 - 703	100	60 / 60	plus	ABC05196 ABC05866 ABC12347
MLOC	MLOC_43777.4	2547	2e-24	650 - 709	100	60 / 60	plus	ABC05196 ABC05866 ABC12346 ABC12347
MLOC	MLOC_43777.2	2423	2e-24	669 - 728	100	60 / 60	plus	ABC05196 ABC05866 ABC12346 ABC12347
JLOC1	JLOC1_28312.1	2540	8e-25	703 - 762	100	60 / 60	plus
Harvest21	ABC14624	709	3e-25	627 - 686	100	60 / 60	plus
Harvest35	U35_6130	709	3e-25	627 - 686	100	60 / 60	plus

Contig Sequence (709 bp)

>U35_6130 709 Hv_44K_v2
CCCTCTCCCCTCCCTCCCTCGTGACGGCTGCGCGCTTGAACCCTCCCACCCCCACACCAC
ACTCGCGCCGCACCGGACGAATCGCGGCGGCGGAGGTCGGAGGCGGCGTGCGGGCGGAGA
GAGAGAGAGAGGCGGCGGCCCGGCGGGATGAAGTATGTCCTGGTGACCGGCGGCGTGGTG
AGCGGGCTCGGGAAGGGGGTGACGGCAAGCAGCATCGGCGTCGTGCTCAAGGCCTGCGGC
CTCCGCATTACCTCCATCAAGATCGATCCTTACCTTAACACCGATGCTGGAACCATGTCT
CCTTTTGAACATGGCGAAGTGTTTGTTCTAGATGATGGTGGCGAGGTGGACTTGGATCTC
GGAAACTATGAGAGGTTTCTAGAAATTAAGCTGACACGCGACAATAACATAACTACTGGA
AAGATCTACCAGTCTGTTATTAATAAAGAAAGAGAGGGAGAATACCTGGGAAAGACTGTG
CAGGTTGTCCCGCACATCACAAATGCCATACAAGATTGGATCGAGCGTGTTGCAATGGTT
CCTGTTGATGGCCAGGAGGGACCTGCCGATGTCTGTGTTATAGAACTGGGTGGCACTATA
GGGGATATTGAATCCATGCCATTTATTGAAGCTCTAGGTCAATTCTCCTATCGTGTTGGT
GCTGGTAATTTCTGTTTGGTACATGTCAGTCTTGTTCCGGTATTGAATG

Homology of Contig U35_6130 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g43020.1	606	3e-92	protein\|CTP synthase, putative, expressed
Brachypodium v1_2	Bradi2g14730.1	606	2e-93
Arabidopsis v10	AT1G30820.1	600	1e-88	CTP synthase family protein \| chr1:10945251-10948825 REVERSE LENGTH=600