barSeed - Barley Seed Development Database

Probe CUST_12121_PI390587928

Source Contig U35_6135

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12121_PI390587928	Hv_44K_v2	GTCACTCAAGTCCGTCTGTATGGTGGAATATTACTATCAGGTATTTTATAGCAAGAAAAA	1569	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_30942.1	439	2e-24	299 - 358	100	60 / 60	plus	ABC12996
JLOC1	JLOC1_20406.1	457	8e-25	299 - 358	100	60 / 60	plus
Harvest21	ABC12996	1641	3e-25	1570 - 1629	100	60 / 60	plus	ABC12996
Harvest35	U35_6135	1641	3e-25	1570 - 1629	100	60 / 60	plus

Contig Sequence (1641 bp)

>U35_6135 1641 Hv_44K_v2
TGGTATCCTGGCGCGTTGCTGGTCCCCACTGAGCTGACTAAACCCTATTCTCTGCTATCA
ATTCTGTTACCTCCCTCTGTGCGCCGCCCGGGTGTCATGGGTCAACCAAGCCAAAGCTTG
CCGGAGGCCCAAACCTCTCCCTATCATTCATGGTGAATGGTGAGTATTGCATCATTGCCT
GTTCAAGCATTAACAAGTACAATCAATGAGGAAAATCTACCGGATCTGAAGTACCAATTC
GATACAATTGATGTTGATAAAGGTGGACCAATTACTGCATTGAAGAAATGCAGCAGTGGC
CCTTGCGAAGGATCTTCACATTAAAGGCTCCTCATGTTCTCAAGATTATTCAGGTTTATT
CGCCATTAAATTTCTACGAAGGGACTTGTCAATCCACCTTACGCCCGTACTAAAATAGAG
TGTTTCTAGAGAGTAGAAACATTGCATGCAGAAATCTTCAAGAAAGAGGTGATTGAAGTG
GTAATCGATGAAATGCCTGCTGGTGAAGCTATCATGGATCCAACTCACGACCTAATTGGC
CACAAAGACCAAAGTCTCGGATTCCTGGAGCAACAAATGTAGTGTTGTCAGTCTCTGAAG
ATGTGAATCCGTCTGCTCCTAGACTACAACAAAGGGATGATTGGGATACTGAAAGTCAGT
ATACAGAGGCTTAGTGGAGTCAGACAGTCAGTCACCAACATCTTCATTGTTTAAACAGCA
ACATCAAGTGGCGCCAAAACATGTGAGTTACTTTCATCTTTGGCATAACCAACCTTATTG
GTGGACTTCCTCTGATTTTTCACAATGTAAAGAACTTCTCTCCTGGCTGAATTTTCAAAA
TATTTTAGTGACCATTACAGAAAACTGGTATCCAAAACTCCAAAAACTAACATGTCATTT
TCTTGTGGATAACATATCACTGATTTGCGAGACAACCGAGTCATGAATGATGACAAATGA
GAAGTTCGACCACTACTCACTCAAGCTTGGAGGTGGTCGAAAGCCAGGCTCTACATGGTC
CTAGCACCGCTCTCATGCATGGTGTTCAGGCTACTTCCACCAGTGCTCTGTGGGTTGTAG
TTCCATGAGAGCTATGACAGGGAGAACGAGATGATGGACGTCGCCGGTGCTTCGCTCGCC
TGCATCGCTCTGCTAGCGCTCGGGAAGGTTATGGCCACACAAGAGCCATGACATACTTCA
AGACTCATTTACTACCTTACCATCGTCATGAGCTTGTCCGGGATGTCGTGCGTCGCTGGT
GTACTGATCATGAGGCTTCTCGGACACTTTGGCACCATTGATCAAGGTTGTGCAACGGCT
CCTCATGCTTCTCTAGCTGTTCTCTCATTTAGGTGATGCACATATGACTGCCTAGGCCTC
ATTCTGAAGTCTTAAGTTCCTCGGAGCATTGATGGTATAAAAAGAAAAGACATGGTTGAG
TTCAAGAGAAAGTGCAGAAAGTGCATGAAGAAACATCTGAATCTTTTTTGAGTTGCTACC
TGATGTTTTGTTATACTTCTGGTGTACATTTTAAGTTACTATCATTTCATGTCAAAATGT
GTGATCTTGGTCACTCAAGTCCGTCTGTATGGTGGAATATTACTATCAGGTATTTTATAG
CAAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_6135 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None