barSeed - Barley Seed Development Database

Probe CUST_120_PI415269222

Source Contig TA48273_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_120_PI415269222	Hv_44K_v2	TATTTTTCCTTTTATGATGGATGGATGATGGGTGTTTATTTCGCCCTCGAGTCGAGGTCT	561	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248762.1	1793	2e-23	1472 - 1529	100	58 / 58	plus	ABC15789 ABC19664
MLOC	MLOC_16752.1	1331	2e-23	214 - 271	100	58 / 58	minus	ABC15789 ABC19664
MLOC	MLOC_16752.4	1364	2e-23	152 - 209	100	58 / 58	minus	ABC15789 ABC19664
MLOC	MLOC_16752.3	1488	2e-23	156 - 213	100	58 / 58	minus	ABC15789 ABC19664
MLOC	MLOC_16752.2	1492	2e-23	214 - 271	100	58 / 58	minus	ABC15789 ABC19664
JLOC1	JLOC1_11564.2	1768	1e-23	1170 - 1227	100	58 / 58	plus
JLOC1	JLOC1_11564.1	1660	1e-23	1062 - 1119	100	58 / 58	plus
Harvest21	ABC15789	769	3e-25	562 - 621	100	60 / 60	plus	ABC15789
Harvest35	U35_6972	887	1e-23	562 - 621	98	59 / 60	plus

Contig Sequence (766 bp)

>TA48273_4513 766 Hv_44K_v2
AAAGGAGGTACACAGAGATCGACAGTTTATTCGGCCAGAAGTATGCAGAACATACAACTT
TGGCGAGCATGGATCAAGCATGGGACAATTCTTCGATCAATACTTGAAACCAATCAAGTT
AAATGATGCTCATATTGACTGGAATTCCGAGGACCTGAGCTACCTCAAGGAGGACAAGTT
TTTAACCAAATTCGGAAAAGACGTGGCTAGCGCCACACCTGTGCATGGATCCGATGCTTT
GTTGAAGGCCCACAATCTGGATGTGGACGTAAGGATTCAGTATGACAACCAGGGCGATTT
CGAGCGTATAGCTCGTCAATTTGGAATATTTGAAGAATGGAAGGACGGTGTTCCACGGGC
GGCTTACAGAGGCGTGGTGGTGTTCCGGTACAAGAGCAGCCGAAGACGGATATACCTGGT
GGGCCCTGACTCTCTTCGCCAACTTGGGGTTTAGCATAGTGTTGCCAAGGTTGGGAAATC
TGTCAACATGGGGAAGTTGACACCCTGATGTAGCAAAACACTGAATGATAGGGTGCAAAT
TCAATGCACAGTTGCCAAGGATATTTTTCCTTTTATGATGGATGGATGATGGGTGTTTAT
TTCGCCCTCGAGTCGAGGTCTCGTGGGGTTTCGCCGTCCGTCTACAGTCAAGGAGGGGAT
AGAGTAGAGTAAGAGCAAGGGAAGAAGAGCGCACGGTGACGAGAATCGCAGAGATAAACT
ATTTGGCTGGGATTCATTCATCCATGTGTGTGTGGGTGTAGTTAGT

Homology of Contig TA48273_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g58590.1	449	6e-71	protein\|N-acetylglucosaminyltransferase I, putative, expressed
Brachypodium v1_2	Bradi3g60820.2	443	3e-95
Arabidopsis v10	AT4G38240.1	444	1e-62	\| Symbols: CGL1, CGL, GNTI \| alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, putative \| chr4:17932006-17935209 REVERSE LENGTH=444