barSeed - Barley Seed Development Database

Probe CUST_12022_PI390587928

Source Contig U35_24306

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12022_PI390587928	Hv_44K_v2	GCTGAGATGTTAGACCACATCTGTTTTCTCTGCCATTTTGTGTAAAACTAACTATTTTAG	901	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72752.1	527	2e-24	368 - 427	100	60 / 60	plus	ABC26218
MLOC	MLOC_72752.2	849	2e-24	359 - 418	100	60 / 60	plus	ABC26218
JLOC1	JLOC1_48411.1	510	8e-25	369 - 428	100	60 / 60	plus
Harvest21	ABC26218	979	1e-24	20 - 78	100	59 / 59	minus	ABC26218
Harvest35	U35_24306	980	3e-25	902 - 961	100	60 / 60	plus

Contig Sequence (980 bp)

>U35_24306 980 Hv_44K_v2
GAGACTGGACATCTACTGGAGTTTATCTTTTCTATCGAAGGTCAAGATGAATCAAGCCCG
TTCTATTCTGTTCGCTTCATGCTTCCAATGCTATCACAAATAACGACGACAGCTGATGGA
TGTAGAACTTTGGTGTCATTTGGAGGCTATAAAGCAGTTATAGACTGCCTCATTAAAATG
ACCGAGGAGAATGGAATGATGATCGACGATGGTAGCATGTTTTTGGCATGTGATACTATC
ATAAACATCATGTCAAATGGGAAGAATTATCCTATTAAAATGGAGCCTTGTTTCATCCGC
CTCATGCAAGCACTTATTACATGGGCTGGAACAACAGATGCTTCATCAGTCATCATGACA
GCAGCCAGCTTATGCACAATGGTGATGGAGTTGACATCAGAAGAGTTTCTCTTGAGCTGC
TCAGGTTTTGACCCCAAGACCCTTGGGAGATTGTCTGACCTCATTGCCAGAAGCTTGCAT
CAGGATATCCCTGACGACGATAGTGAACAGCTTAACCAAAAGCAAATCATTGCATCAGGT
TATAGGCGCTGGGCTGATCGATTCCCGAGTGTTAGAAATGTCGTACATCAGCATGTATCT
GTCTGATCTTCTCTGCCCAAAGAGTTCTCTGTTGCGAATGTAGCCATACAGATGGGGAAC
CCATAGTGCAAGCATCCTGTTGCATCAGGTGTAATCTCATGCGGGGTTGCGTAACCCGTT
CCCCTCGCCGGCATCCACATGTAGCCGTCGGTGGCTGACTCGTTATTCTGTGTAACGGCC
GATGCCTTACTTGAACGCGCTGCTAGGGCAGGCAGGGTAGGGTTGCAAACATCACTTGAA
CCCTCAGTGGCTAGCTGGCATGGGTTTCTCACTACACTGGATTACATTAAGTGACAGGCT
GGCTGAGATGTTAGACCACATCTGTTTTCTCTGCCATTTTGTGTAAAACTAACTATTTTA
GTGTAACAATGACACATAAA

Homology of Contig U35_24306 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g55530.1	647	1e-79	protein\|neurochondrin family protein, putative, expressed
Brachypodium v1_2	Bradi3g54267.1	639	1e-99
Arabidopsis v10	None