barSeed - Barley Seed Development Database

Probe CUST_11982_PI390587928

Source Contig U35_24859

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11982_PI390587928	Hv_44K_v2	TAGTTCATTTAGCTGTCTGTATGTACATGTTTAGAGTTTATCTCTTGTGGAACGCAATGC	693	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38071.1	1625	2e-24	30 - 89	100	60 / 60	minus	ABC23499
MLOC	AK365357	3343	7e-23	3123 - 3182	98	59 / 60	plus	ABC23499
JLOC1	JLOC1_24720.1	1626	8e-25	1387 - 1446	100	60 / 60	plus
Harvest21	ABC23499	826	3e-25	74 - 133	100	60 / 60	minus	ABC23499
Harvest35	U35_24859	826	3e-25	694 - 753	100	60 / 60	plus

Contig Sequence (826 bp)

>U35_24859 826 Hv_44K_v2
GTTTGATGGATTTGGTTATGCATTCCCTCGAGGCTCTCCACTCACACCTGATATTTCTAG
GGGAATACTGAAATTCGCATCGGATGACAGAATGGTTAAGATGCAGAATGAATTGTATGG
CTATACTTCATGCCCCGACAAAGATGACTCCCAAACTTCAAGCAGCCTTACATTGCACAG
CTTTCAGGGGCTGTTCATCATCAGCGGAGTATCTTCAGTGCTGGCATTAGTCCTGCACGC
TGTCATAACCATTTATAACAACCGACATGAATTCAGCAGTGACAGCAGTCAGAGTTCATG
GCGCAGATGGCCTGTCGTTCTCTCCAAGCTCTTCCACGGGGACGATAGTCCTTCCAACAC
TCCAGTTGAAGATGAAGCCGCAACGGAAAATGTTGGTAGTGCAGTTGAGACCCCACTGAG
CATACGCATACCTGGTCACATTGTCGAGCACCTGTCAAACACGGAGACAGGAAGCCCACA
GGAAGGAGAAGGAACACCAGGCAGGGAGATCTCGGTTCAGGACACGGAACCGCTGTCGTT
TGCTTACATGCATTTTGAGAGGGGGCAAAACAGAGTAGCTTCCTTGTCTCGCAGTGGGAG
CTCAATCCGCAGGAGACAGATAAGCATGGAATGAACTACTGCTTGATGAGCGCGTAAATT
ACTGATCGCTGTAAGCCTGTAATTTAGTACTAGTAGTTCATTTAGCTGTCTGTATGTACA
TGTTTAGAGTTTATCTCTTGTGGAACGCAATGCTTGATGTGCATTGCCACATTGGCGGTT
GGTGATAGATGTGAGGAGCAAGCGATTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_24859 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g30850.1	979	7e-65
Arabidopsis v10	None