barSeed - Barley Seed Development Database

Probe CUST_11882_PI390587928

Source Contig U35_48844

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11882_PI390587928	Hv_44K_v2	CATACACGAGATATATAACCTGTATGTAACATTCTTTCCGTGCCAATGAAAATATGGCAA	28	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.223	1.660	1.112	0.831	0.334	0.702
Raw	60.169	132.946	75.299	91.543	12.489	26.451

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51098.1	2602	2e-24	1359 - 1418	100	60 / 60	plus	ABC13743 ABC14307
MLOC	MLOC_51097.4	1791	2e-24	1352 - 1411	100	60 / 60	plus	ABC13743 ABC14307
MLOC	MLOC_51097.1	2046	2e-24	1175 - 1234	100	60 / 60	plus	ABC13743 ABC14307
MLOC	MLOC_51097.3	1359	2e-23	1302 - 1359	100	58 / 58	plus	ABC14307
JLOC1	JLOC1_32610.1	1430	8e-25	1196 - 1255	100	60 / 60	minus
JLOC1	JLOC1_32609.1	1768	8e-25	1170 - 1229	100	60 / 60	plus
Harvest35	U35_48844	543	3e-25	29 - 88	100	60 / 60	minus

Contig Sequence (543 bp)

>U35_48844 543 Hv_44K_v2
TTTTTTTTTTTTTTTTTAACAGAAAACATTGCCATATTTTCATTGGCACGGAAAGAATGT
TACATACAGGTTATATATCTCGTGTATGAGCTACATGTTTATTTTTCTAGTTTCCAAGAG
GCCAAAATTGTGGAAAGGCAATGGAATTTCGTGCTGATAAATTCATACAGGTGCCTCTCA
AATCAAGTAAATATTGTTCATATCGGCCCTATTTATCATTCATCAAACGCTCAGCTAGGA
GCATGTCATCAGGAGTAGTCACCTTGATGTTTGTATAAGAGCCCTCGGTGATGTAAACAG
GATGTTTCAAGTATTCTGCGGAGTTTGCATTTCCCAAAGAGTTTTCCTATCAAGGGTTTT
TACGACGAAAGAATCGCTGTTGGCCTCCTTTATAGTAGCTTTGACGGGCACACCGAGAAC
AGCTGCTCCATGCACCGCAGCATCTTCTAAGACCTTTTTCACATCTTCAGAGGATACCAA
GGGTCTTGCAGAATCATGGACACAAACAAGTTCTGAATCTCCATTAATTTCCTGAAGTCC
ATT

Homology of Contig U35_48844 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None