barSeed - Barley Seed Development Database

Probe CUST_11833_PI390587928

Source Contig U35_19079

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11833_PI390587928	Hv_44K_v2	TGTATAATGAAATGTTTGAAGAATCACCTGGCAAATTCGGGCCTGGATCTCATGCCTTTC	792	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65717.1	980	2e-24	846 - 905	100	60 / 60	plus	ABC11742 ABC13724
JLOC1	JLOC1_43260.1	1023	8e-25	851 - 910	100	60 / 60	plus
Harvest21	ABC11742	890	3e-25	783 - 842	100	60 / 60	plus	ABC11742
Harvest35	U35_19079	900	3e-25	793 - 852	100	60 / 60	plus

Contig Sequence (900 bp)

>U35_19079 900 Hv_44K_v2
GGCGTCCAGGTCCAAGTCCGAGCAGCACCGACCGAGCACCTTCTCAAACCCCTCAACCCT
CGCCGCCGCCGCGCCGGCCGCTCAGCCCCCGCCGCCGACGCCATGGGCAAGTTCCGCAAG
CTCGGGCGCCACGCCGCGCACCGCGTGTCCATGCTCAGGACGATGGTGTCGCAGCTGGTG
AAGCACGAGCGCATCGAGACCACCGTCGCCAAGGCGAAGGAGGTGCGGCGCAAGGCGGAT
CAGATGGTGCAGCTCGGCAAAGATGGTACACTGGATGCAGCAAGACGTGCTTCTGCTTTT
GTTCGTGGAGATGATGTTGTCCATAAGCTATTCACAGAGCTGGCCTACCGCTATAAAGAT
CGAGCAGGCGGATATACAAGACTTTTGCGAACTAGGATACGAATAGGTGATGCTGCACCA
ATGGCATACATTGAGTTTGTTGACAGAGAGAACGAACTCCGAGAGGCCAAACCTGCAACG
CCGCCACCGCCTCAGCGGGTTCCACTTGATCCATGGGCCAAATCTCGTGCTAGCCAGCAA
TGGGCGGGACCGAAAGTTACCGTCAACCCCAAATCAGAAGGCTTATGAGAGCACCATCTG
CACTATGTTTCTTACTGGTGAATGAGAGTATCCATTTTGTTTGTGTAACTCAGACCAAGC
ACGAGGCTTATCATGCAGGAGGATTTTTGCCAGCGTATAATTGTCAATAGAAATAATTCA
ACTTAGATCTGCTATCCCTCCAGCGTATGGGCAAGAAATGTCAGCGATGTGTTGGTTTTT
TTTTATTGCCGATGTATAATGAAATGTTTGAAGAATCACCTGGCAAATTCGGGCCTGGAT
CTCATGCCTTTCGCGGCCTCCATGAAAAGTACGTATCTCGGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_19079 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g62210.1	162	1e-102	protein\|50S ribosomal protein L17, putative, expressed
Brachypodium v1_2	Bradi2g54520.1	162	3e-107
Arabidopsis v10	AT5G09770.1	160	9e-86	Ribosomal protein L17 family protein \| chr5:3035267-3036518 REVERSE LENGTH=160