barSeed - Barley Seed Development Database

Probe CUST_11832_PI390587928

Source Contig U35_45342

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11832_PI390587928	Hv_44K_v2	AGAATCGTCAAGAAATTCAACGGAGGAGTTCCCAATGTTTACCCGGTCGATCTCTTTGAG	416	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5927.1	3307	2e-24	1250 - 1309	100	60 / 60	plus	ABC11470
MLOC	MLOC_5927.5	2685	2e-24	1610 - 1669	100	60 / 60	minus	ABC11470
MLOC	MLOC_5927.4	2659	2e-24	1566 - 1625	100	60 / 60	minus	ABC11470
MLOC	MLOC_5927.2	2324	2e-24	1833 - 1892	100	60 / 60	minus	ABC11470
MLOC	MLOC_5927.6	3171	2e-24	1395 - 1454	100	60 / 60	minus	ABC11470
MLOC	MLOC_5927.3	2823	2e-24	1820 - 1879	100	60 / 60	minus	ABC11470
MLOC	MLOC_5926.5	2162	3e-22	456 - 514	98	58 / 59	plus	ABC11470
MLOC	MLOC_5926.4	2508	3e-22	802 - 860	98	58 / 59	plus	ABC11470
MLOC	MLOC_5926.3	2796	3e-22	1126 - 1184	98	58 / 59	plus	ABC11470
MLOC	MLOC_5926.2	2551	3e-22	1126 - 1184	98	58 / 59	plus	ABC11470
JLOC1	JLOC1_3844.2	2939	8e-25	955 - 1014	100	60 / 60	plus
JLOC1	JLOC1_3844.1	3568	8e-25	1584 - 1643	100	60 / 60	plus
JLOC1	JLOC1_3843.1	3007	1e-22	1118 - 1176	98	58 / 59	plus
Harvest21	ABC44102	479	3e-25	417 - 476	100	60 / 60	plus
Harvest35	U35_45342	479	3e-25	417 - 476	100	60 / 60	plus

Contig Sequence (479 bp)

>U35_45342 479 Hv_44K_v2
GGCGTCTCACAAAGTGGTCCCTTGGCCCTGATAAATGCAGGAGAGGGCTATCTTTTCTGG
AGGAAAACATGTGGAGGCTAGCAGAGGAAGACCTGGAGTCGATGCCCATCGGCTTCGAGA
TTGCGTTCCCTTCTCTCCTGGAGGTGGCCAAGAGCTTGGGCATTGGGTTCCCGTATGACC
ACCATGCTCTGCAGCGCATATATGCCAACAGAGAAGTGAAGCTCAAGAGGATCCCGATGG
AGATGATGCACAAGATTCCAACGTCGATCCTGCATTCCCTTGAAGGGATGCCCGGGGTGG
ACTGGCAGAAAATCCTCAGGCTCCAGTCTAGTGATGGGTCCTTCCTCTATTCTCCTTCGG
CTACAGCCTGCGCTCTCATGCAAACCGGTGACGCGAAATGCTTCGAATACATCGACAGAA
TCGTCAAGAAATTCAACGGAGGAGTTCCCAATGTTTACCCGGTCGATCTCTTTGAGCGC

Homology of Contig U35_45342 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g17780.1	868	1e-79	protein\|ent-kaurene synthase, chloroplast precursor, putative, expressed
Brachypodium v1_2	None
Arabidopsis v10	AT4G02780.1	802	5e-63	\| Symbols: GA1, ABC33, ATCPS1, CPS, CPS1 \| Terpenoid cyclases/Protein prenyltransferases superfamily protein \| chr4:1237881-1244766 REVERSE LENGTH=802