barSeed - Barley Seed Development Database

Probe CUST_11733_PI390587928

Source Contig U35_17399

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11733_PI390587928	Hv_44K_v2	GAGGCTTTGTCCTGAGTACATTATTTTCACTCAGTTTTAGACAGTTATTAGTCGACTAAC	1477	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_49894.2	1323	7e-23	1200 - 1259	98	59 / 60	plus	ABC04951 ABC08031 ABC49857
MLOC	AK354465	1535	3e-21	1479 - 1535	98	56 / 57	plus	ABC04951 ABC08031 ABC49857
JLOC1	JLOC1_31900.1	1363	4e-23	1178 - 1237	98	59 / 60	plus
Harvest21	ABC08031	1560	1e-23	1475 - 1534	98	59 / 60	plus	ABC08031
Harvest35	U35_17399	1565	3e-25	1478 - 1537	100	60 / 60	plus

Contig Sequence (1565 bp)

>U35_17399 1565 Hv_44K_v2
ATCATCCATCCACATCCAGTCTTCGGTTCTTCGCTCCTCGCCAACCTCAACCTGCCATGG
CCTCCACCGTGGCCTTCACCCCCGCCGTCGCCGTCGCCGTCGTCGGCGCCAATGTGCAGC
ACGCTCGGAGGACCTCTTCGCTGCGGCCCGTCCCGAGAGCCAGGCCCGTGGCTGCGAGGG
CCAGCGCCGAGAGGGACGGCGCCGCGGCGGTCGTCCAGGCGCGGTCGGGGAGGACCATCG
AGGAGTGCGAGGCGGACGCCGTCGCCGGGAAGTTCCCCGCCGCGCCGCCGCCGACCAGGC
CGCAGGCCCCCAGCGGCACCCCGGAGATCAGGCCCCTCGACATGGCGAAGCGCCCTCGCC
GGAACCGGAGGTCGCCGGCGCTCCGGGCAGCGTTCCAGGAGACCAGCATTACCCCCGCGA
ACCTCGTCCTCCCCCTGTTCATCCATGAAGGTGAAGAAGACACTCCCATTGGAGCTATGC
CTGGGTGCTTCAGGCTTGGATGGAGGCACGGGCTTCTGGAAGAGGTTTACAAGTCACGGG
ATGTTGGTGTTAACAGCTTTGTGCTATTCCCAAAGGTTCCTGATGGATTAAAGACTCAAA
CAGGAGATGAGGCATATAATGATAATGGTTTAGTGCCTCGAACAATCCGTTTGCTCAAGG
ATAAATACCCTGACATTGTTATCTACACTGATGTTGCTTTGGATCCATATTCTTCTGATG
GTCATGATGGCATTGTGAGAGAAGATGGAGTCATCATGAACGATGAAACAGTTCATCAGC
TGTGCAAGCAGGCAGTTTCCCAGGCTCGAGCTGGTGCTGATGTTGTCAGTCCTAGTGACA
TGATGGATGGTCGTGTTGGGGCGATTCGGGCTGCATTAGATGCATAGGGTTTCCATGATG
TCTCCATCATGTCCTACACTGCAAAGTATGCTAGTTCGTTTTATGGTCCATTCCGTGAAG
CTTTGGATTCAAATCCACGATTTGGAGACAAGAAGACTTATCAGATGAACCCAGCCAACT
ACAGAGAAGCCCTTATAGAAACTGCAGCAGATGAGGCAGAAGGAGCTGATATTCTTCTGG
TGAAACCCGGATTACCATACCTTGATATTATCCGACTTCTACGGGATAATTCAGCCTTGC
CAATTGCTGCATACCAGGTGTCAGGCGAGTACTCGATGATCAAGGCCGGCGGCGTGCTGA
AGATGGTGGACGAGGAGAAGGTGATGATGGAGTCGCTGCTGTGCCTCCGGCGCGCCGGCG
CCGACATCATCCTCACCTACTTCGCCCGCCAGGCCGCCAACGTCCTCTGCGGCACCAAGC
GGCCGTAGCTCATCACGGAAGTCAGTTTCTTGTAGTGGTACCATGGCCATGGCGTATCAC
TGCATTGCAGAGCGTGGAGGCTTATCCAGTGGTGCGGCGCGGCCATGCTCTCCGGTAGAT
GGAGGTTTATTACTGGCTTCGGTTCGGTGTAATTAACGAGGCTTTGTCCTGAGTACATTA
TTTTCACTCAGTTTTAGACAGTTATTAGTCGACTAACTGATTTTTCGTAAAAAAAAAAAA
AAAAA

Homology of Contig U35_17399 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g49110.1	427	protein\|delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi3g03360.1	425
Arabidopsis v10	AT1G69740.1	430	\| Symbols: HEMB1 \| Aldolase superfamily protein \| chr1:26232197-26234713 FORWARD LENGTH=430