barSeed - Barley Seed Development Database

Probe CUST_1167_PI390587928

Source Contig U35_21135

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1167_PI390587928	Hv_44K_v2	CTCGGAATGGAATAAACTACTGTGAGATTCTTCAGATTGAACCGCGTTCGTTTTTGCATC	642	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7433.1	1015	2e-24	662 - 721	100	60 / 60	plus	ABC15764
MLOC	MLOC_7433.2	639	2e-24	487 - 546	100	60 / 60	plus	ABC15764
MLOC	MLOC_7434.1	2070	2e-24	436 - 495	100	60 / 60	plus	ABC11624 ABC11625 ABC15764 ABC44428
MLOC	MLOC_7433.3	875	2e-24	571 - 630	100	60 / 60	plus	ABC15764
JLOC1	JLOC1_4897.1	2338	8e-25	1536 - 1595	100	60 / 60	minus
Harvest21	ABC15764	721	3e-25	643 - 702	100	60 / 60	plus	ABC15764
Harvest35	U35_21135	721	3e-25	643 - 702	100	60 / 60	plus

Contig Sequence (721 bp)

>U35_21135 721 Hv_44K_v2
TCGGCAAAGTCCCCAAGTGTAACACGCACGCGAGCACAAAACCGCACAAATATGTCGACG
GTGGAGGAGGAGGAGCTGTCCGAGTGCGAGGTGCTGTGGCCGGAGACGCGCCACGGAGCT
CCGGGGAGCCCGTATGGGCCATCGACGGCGGCTCCCGGAGGAGCCTCCAGGGATCACCGC
CGGCAGCGCTCTGCGCCCGTGGACATTCCCAGGCCCGCCCACCTGCCCCGCGGGCGCGCC
GACCTGGACGACGAGGAGGAGGAGGAGGAGCACGACGGCGCCATGGTGCCGCCGCACCTG
ATGGTGTCGCGCAGGTGGTCGGAGGGGAAGGCGGCGGCGTTCTCGCTGCGGTCGGGGCCC
GGGCGGGCGCACCGGGACCTCAGCCACCTGCGCAACTCCGTGCTGCGGATGACCGGCTTC
ATCGAAGGGTGACAGTGACAGAGAAGGCGGGCCCGCCGTCGTCTGTGCATACGTGCGAGC
GAGGAAAGTAGACGGTGGCACCACGCGTCTTCGCCACGGTGTTGGGCTGTTGGTCAGTCA
ATTTTGTTGGGCTCATCTTCCCCGTGGCTGCCAGTCGAAATGATCAGTCTCCCTTGGGTT
GGTTCATGGAAATCGGCCGGTAGCGAGTTTAGGATTATTTTTCTCGGAATGGAATAAACT
ACTGTGAGATTCTTCAGATTGAACCGCGTTCGTTTTTGCATCNNAAAAAAAAAAAAAAAA
A

Homology of Contig U35_21135 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None