barSeed - Barley Seed Development Database

Probe CUST_11677_PI390587928

Source Contig U35_43690

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11677_PI390587928	Hv_44K_v2	GAGTCATGAGTGTGATACCAAATTATCAAGGCAAGCTGCAAGTGATTTGTTTTAAGTAAA	13	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359305	818	3e-22	545 - 603	98	58 / 59	plus	ABC03353 ABC03354
JLOC1	JLOC1_50677.1	869	1e-22	692 - 750	98	58 / 59	plus
JLOC1	JLOC1_50676.4	1949	1e-22	1200 - 1258	98	58 / 59	minus
JLOC1	JLOC1_50676.3	1900	1e-22	1151 - 1209	98	58 / 59	minus
JLOC1	JLOC1_50676.2	3599	1e-22	2850 - 2908	98	58 / 59	minus
JLOC1	JLOC1_50676.1	1968	1e-22	1219 - 1277	98	58 / 59	minus
Harvest21	ABC40638	617	3e-25	14 - 73	100	60 / 60	minus
Harvest35	U35_43690	617	3e-25	14 - 73	100	60 / 60	minus

Contig Sequence (617 bp)

>U35_43690 617 Hv_44K_v2
TTTTTTTTTTTTTTTTACTTAAAACAAATCACTTGCAGCTTGCCTTGATAATTTGGTATC
ACACTCATGACTCATAGCTCCTAGTAATAAACATTACAGTAGTATCTTGTAATTTTACAA
ACAAATCGCTGCTCGCTTTATTGTAAGCCAAGCCAAATAAAGCAACAAACCAAACTTACA
CGCCCAAGATGCCAATGTGCCACGGAAGCTAAGCTCGAAGCTACCGCTCATGATGACGGC
CGGCAATGGCAGAAGCCGGCACGAGCTCGCACGGCTAGCTGTCGTAGGTGCGGCACTCGT
CGGTCTCGGGGTTGTCCTCGCAGAACTCCTCGAGCGGGTCGCTGTGTTCCTTCTTGCGGT
CGCGCGCGTGGCTGGCCGCGGCGCTGAGCTCCTCCACCTCGTCCCACGCCGCCACGCACT
CGCCGCCCACTGGGTCGCCCGCGCACGTCTCCTCCGCCTGCTTGATGCTCTCCGTCACCT
TCTGCGCCAGCTCCGGGGGGCGTGGACGGCGAGCCCGCCACGGCCACCAGCCGCCGGCCG
TGCGCGCGCATCGCCCGGGCCGCGAACGACACGACGCTCGGGCGAGATGGCAGCGTGGCC
GACGGCTGCGCAACGCT

Homology of Contig U35_43690 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None