barSeed - Barley Seed Development Database

Probe CUST_11656_PI390587928

Source Contig U35_2614

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11656_PI390587928	Hv_44K_v2	CCGTTATGCTGTCAGTTTTTTGGGATGTGTCATTGTCAATGTGAAATATATTTCTGAGAT	1119	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68654.1	2194	2e-24	2109 - 2168	100	60 / 60	plus	ABC06948 ABC06949 ABC06950 ABC40620
JLOC1	JLOC1_45436.1	2326	8e-25	2109 - 2168	100	60 / 60	plus
Harvest21	ABC06948	1065	3e-25	987 - 1046	100	60 / 60	plus	ABC06948
Harvest35	U35_2614	1209	3e-25	1120 - 1179	100	60 / 60	plus

Contig Sequence (1209 bp)

>U35_2614 1209 Hv_44K_v2
TTCCTGGTAGAATCTCTCTCAGATTCAACCCTGTACATGGCTTATTACACCATCGCTCAT
CATCTACAAAATGGTAATATGTATGGACAAGAAATATCTTCTATCAAGCCAGAAGAAATG
ACAGATGAAGAAGGAAGGTTTTGCAATAAAAGCTGGCTGGCCAGTTGCAGGCACCCCGGA
TCCTACTCTAAGAAGTGCGAACAAATATTTACAGGACTCCATTGTTTTAATGAGGAAGTT
GCTTCAGAAGCAAGAGTCTGGTTCCAAGAAACCCAAGAAGGGAGCCGCACCTCCTCCATC
AGCAGAAAACAAGCTCACTGTTGGTCTGATATATGTCAACGAGCACTATGATGGATGGAA
AGAACAATGTTTGAGGGTGCTTCAATCAAATTTTGATAGCCAAACATGCTCCTTTGCCCC
CGACGAGGAGATTAACGAAGCGTTAAGGAACTGCTTCATCGACCGCGAATCAAATTTCAA
ACAAGTACAGAAGCTCTGCATGCCTTTCATCAGGTTCAAGAAAGATGAAGCAAGGAACGT
TGGTCCCCAGGCTCTAAATTTGAAGCTTCCTTTTGGTGAAATTAATGTGCTTGAGGAGAA
CCTAGAGCTGATCAGAAGGCAGTTGGGTCTTGAGCATGTTGAGGTCCTGTCGGCACTTGA
TGGAGCTGCTCGTGCCAAAGCTGGAAAGCATGCTTCTCTGCTAGACAAGAATCCGCCTTC
CCCTGGTGAGCCGGTTGCAATATTCATGAGCAAGCAGGAGTTTGAAGTCCAGATTTAAGC
TTCAGATTAATCTTCTCACAGAACTTTGTTGAGGTTTTTTTTGCAAGGCAAGGCATATCG
ACTGGATGTTCCTCCTTTTCATTCCAGCATGACGCGCCTGTTGGGAACATGGAAAGAAGC
GTTATTTCTAGCCTGACTGCAGATGATTGAGAAGGAACTTAGTTTCCAAGCTTTTGCCAA
TTTTGAGATGGCAAGTACAGAATACAATGAGCATTCTTGCTTTATATACAGCAATGTCTA
GTTTGTTTACTTACCAAAGTTGTGATATATTCCTGGCATTTGATCACATACTCCCATGAC
ATATTGTTTCTGCTGAAATGTCCAGTGACCATAGTAATGCCGTTATGCTGTCAGTTTTTT
GGGATGTGTCATTGTCAATGTGAAATATATTTCTGAGATATGTCATGCATCCAAAAAAAA
AAAAAAAAA

Homology of Contig U35_2614 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g21110.1	1095	9e-91	protein\|leucyl-tRNA synthetase, cytoplasmic, putative, expressed
Brachypodium v1_2	Bradi2g08390.1	1097	2e-107
Arabidopsis v10	AT1G09620.1	1091	9e-60	ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases \| chr1:3113077-3116455 REVERSE LENGTH=1091