barSeed - Barley Seed Development Database

Probe CUST_11655_PI390587928

Source Contig U35_2615

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11655_PI390587928	Hv_44K_v2	ACTTTGTTGAGGGTTACTTGTTGATAGATGGGGGAGCTGCAACTTCGAAAATCAGCAAGC	297	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363274	3768	2e-24	3394 - 3453	100	60 / 60	plus	ABC06948 ABC06949 ABC06950
MLOC	MLOC_66670.1	2206	7e-23	361 - 417	100	57 / 57	minus	ABC06948 ABC06949 ABC06950
JLOC1	JLOC1_43964.2	2422	4e-23	1791 - 1847	100	57 / 57	plus
Harvest21	ABC06950	692	3e-25	336 - 395	100	60 / 60	minus	ABC06950
Harvest35	U35_2615	693	3e-25	298 - 357	100	60 / 60	plus

Contig Sequence (693 bp)

>U35_2615 693 Hv_44K_v2
TTTCATCAGGTTCAAGAAAGATGAAGCAAGGAACGTTGGTCCCCAGGCTCTAAATTTGAA
GCTTCCTTTTGGTGAAATAAATGTGCTCGAAGAGAACCTGGAGCTGATCAGAAGGCAGTT
AGGTCTTGAGCATGTTGAGGTCCTGCCGGTATTTGATGAAGCTGCTCGTGCCAAAGCTGG
AAAGCATGCTTCTGTGCTGGACAAGAATCCGCCTTCCCCTGGTGAGCCAGTTGCAATATT
CATGAGCAAGCAGGAGTTTGAAGCCCAGAATTAAGCTCAGATTAATCTTCTCACAGAACT
TTGTTGAGGGTTACTTGTTGATAGATGGGGGAGCTGCAACTTCGAAAATCAGCAAGCCAG
TTCCATGTTCCAGGACCAGTTCTTCTGCACAAGGAATGACCAAAGTTCGGGTGAAACTCA
CCTATTTCGGGACTTCCCTATCCGCTGGTGATCAAACTAAACGCTTGAATTGCTGATTGC
AATCATGAATCATGAAAATGGAGTACTGTTGAGGCAGCAGTTTAGCTATAATAGAGTACT
TTTTTGCGATGTGTTATGACATAGTTAAATTGTCGTGAATATTATCATTTTGCCAAGTCA
TTTGAGTATCTTCTTTTGTATTCATTCCTCAATCTTCATTTTCAATTTTGAGGATTTAGT
CTTTTGTTCTTCAGTCCTTGTGCACTTTCAGTG

Homology of Contig U35_2615 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None