barSeed - Barley Seed Development Database

Probe CUST_1163_PI390587928

Source Contig U35_21139

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1163_PI390587928	Hv_44K_v2	GAAGGTGTCACATCTTGACCAGTTTATTTCAAAAAGCAATAATGATCGATATACGTAGAC	939	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363693	1735	2e-24	1348 - 1407	100	60 / 60	plus	ABC16386 ABC19129 ABC38521
MLOC	MLOC_23321.1	1785	2e-24	100 - 159	100	60 / 60	minus	ABC16386
JLOC1	JLOC1_16117.1	1683	8e-25	107 - 166	100	60 / 60	minus
JLOC1	JLOC1_16116.1	1107	8e-25	942 - 1001	100	60 / 60	plus
Harvest21	ABC16386	1086	3e-25	908 - 967	100	60 / 60	plus	ABC16386
Harvest35	U35_21139	1118	3e-25	940 - 999	100	60 / 60	plus

Contig Sequence (1118 bp)

>U35_21139 1118 Hv_44K_v2
CGAGTCGCTCCATCTCGCCGGCAATAGCTTCACCGGCCTCTTCCCGCCGGTCGTGGAGGG
TTGCGATTCGCTCGGCACCCTCGACATCGGGAGTAACAGGTTCTTCGGCGCCATCCCTCC
ATGGATCGGGACCAAGGTTCCGTCGTTGAGAATCCTTAGCCTTAGATCAAACGATTTCAC
AGGAGAAATCCCTTCGGAGTTGTCGCGGCTCTCAAAACTCCAGCTGCTCGACCTTGCCAA
CAACAGGCTGACAGGAGCAATTCCCGTAGCATTCGGCAACCTGGCCTCCATGAGGAATCC
AGAAATCGTGTCGAGTGCGGCATCATCGCTGGATGGGTCGAATTATCAGGATAGAATCGA
TATAATCTGGAAGGGCCAGGAGCTCATTTTCCAAAGAACGATCCGGTTGCTGACCGGTAT
CGATCTGTCAGGCAATATGTTGTCTCAGTGCATCCCTGAAGTATTAACCAAACTGCAGGG
CCTCCGATTTCTGAACCTGTCAAGAAATCATCTGTCATGCGGCATCCCTCAAGATATTGG
CAGTTTGAAGAATCTCGAATTTCTTGATATATCATGGAATGAGCTTTCAGGACACATTCC
ACAGAGCATCTCGATCTTGTCGACGCTCAGCATATTCAACATCTCGAACAATCATTTGTC
AGGCAAGATACCTACTGGGAGCCAGATGCAGACATTGACCGACCCTTCGTTTTACCGAAA
CAATTCCGGCCTTTGCGGATTTCCTCTAGAGGATTGTCCAAATACTTCGCCTGCTTCGGA
TGAGAAAACTAGTGAGGGGGAGGACCAGTGGCTGTACTACTGTGTGACTGCTGGGGTTGT
TTTTGGATTTTGGCTATGGTTTGGGCTGCTCTTTTCGATTGAGACGTGGAGATCTGCTGT
TCTCTTCTCTGTCGATGGCATGCAATCCAAGGTTATGCAGAAGGTGTCACATCTTGACCA
GTTTATTTCAAAAAGCAATAATGATCGATATACGTAGACTGTAGTTGTTTCTTTCTTTGT
TGTACCATCAGAAGAATGTATCTATGTGTATATATGTATGTCTGTATGTATGTACCTAAG
TATGCTACTCCCCCCGTTTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_21139 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g33140.1	512	2e-139	protein\|hcrVf2 protein, putative, expressed
Brachypodium v1_2	Bradi3g28390.1	457	6e-167
Arabidopsis v10	None