barSeed - Barley Seed Development Database

Probe CUST_11631_PI390587928

Source Contig U35_17404

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11631_PI390587928	Hv_44K_v2	ATTGCAATGTGACAAACTAGCGAGGTCACACGGGCGTATTTGTACGAACTAATAAGATTT	783	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249816.1	886	2e-24	808 - 867	100	60 / 60	plus	ABC02229 ABC07800 ABC39432 ABC49780
JLOC1	JLOC1_46910.1	1452	4e-23	1066 - 1125	98	59 / 60	plus
Harvest35	U35_17404	872	3e-25	784 - 843	100	60 / 60	plus

Contig Sequence (872 bp)

>U35_17404 872 Hv_44K_v2
GGAAGAAGTAGCGTAAGATCACCTTGAGGTTAGGGTACAAGTTCCTTCCATCTCACCCAA
GAACAACAGGTTAAGAAATCAGCCTCTTTCCCGGATTTTTTGCTGATTCCTAGGGGAAAT
GGCCTTGAGGAGGATCGTCAAGGAGCTCAAGGACCTGCAGAGGGACCCCCCGACCTCCTG
TAGCGCAGGGCCGGTGTCGTCGAACGACATGTTCCACTGGCAGGCGACGATCATGGGGCC
GAGCGACAGCCCCTACTCGGGCGGCGTGTTCCTGGTGACCATCCACTTCCCGCCGGACTA
CCCGTTCAAGCCACCCAAGGTGGCCTTCAAGACCAAGGTTTTCCACCCCAACATCAACAG
CAACGGCAACATCTGCCTCGACATCCTCAAGGACCAGTGGAGCCCCGCCCTCACCATCTC
CAAGGTTCTGCTGTCGATATGCTCGCTGCTGACGGACCCGAACCCGGACGACCCGCTGGT
GCCGGAGATCGCGCACATGTGCAAGGCCGACCGGACCAGGTACGAGTCCACGGCCAGGGG
CTGGACGCACAAGTACGCCATGGGGTAGATATAACTAAATAAGAGCTGCAGCTCGATCGA
GCTCAAAGATGTGGAAAGTGCTTATGATGTGCGGACGAATAATAATCTATGAAACTTTGC
TTCGAATCAAAAAAAAAAAAAAAAAATACGGCTTTAATTGATGCCGGGTAACTGACGCTG
AGGAGTGTGAACTTGATCATCATCAGTCCTCTCTCGTGCGAGGGGCTGGATGCACAAGTA
ATGATTGCAATGTGACAAACTAGCGAGGTCACACGGGCGTATTTGTACGAACTAATAAGA
TTTTTTTTGAGGATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_17404 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g02830.1	149	1e-102	protein\|ubiquitin-conjugating enzyme, putative, expressed
Brachypodium v1_2	Bradi1g39270.1	149	8e-96
Arabidopsis v10	AT4G27960.2	178	1e-95	\| Symbols: UBC9 \| ubiquitin conjugating enzyme 9 \| chr4:13916065-13917293 REVERSE LENGTH=178